Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0206
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.21 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   1.9  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.6  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   5.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 368 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 210
           L ++CP      T GP PG T  +PT  ++        Y     S+++S I  +ST+ + 
Sbjct: 36  LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94

Query: 209 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 48
            S      V  S + +   T+       T  S  T SS+ S  T P +S+++ +
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 281 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 102
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 101 SSLR 90
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 288 RDGESRVYPAVR-VHNGERDFINDAVN 211
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 515  RPSTMGQLRSRTNILMRPPSHVFH 444
            RPST G   +R +IL+  PSH FH
Sbjct: 956  RPSTKGS--NRPSILLSKPSHDFH 977


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 491 LTVPSLKDECKSGRKKLLVDYFHTNLHTQNFY 586
           L +PS ++    GRK L  D  H++L T   Y
Sbjct: 444 LRIPSTRNYALIGRKLLSNDLLHSSLSTDALY 475


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 258 VRVHNGERDFINDAVNRVTDVL 193
           V   NG R+++ DAV R  DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 512  DECKSGRKKLLVDYFHTNLHTQNFYAFRFF 601
            +E KS  K LL    +T LH   +Y F FF
Sbjct: 1285 EEVKSSHKTLL----NTELHLTKYYGFSFF 1310


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 388 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 483
           WV   L+F+AI+  VP     L+ T +GG++++ V
Sbjct: 51  WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 491
           I S NP L S     N+ RR   D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,474
Number of Sequences: 5004
Number of extensions: 62322
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)