Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0206
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    31   1.1  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   4.6  
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890     29   4.6  
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    28   6.1  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   6.1  
12_02_1279 + 27510605-27513301                                         28   8.0  
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317           28   8.0  

>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 681 LKILRPKRSP*KNI*PXTLIKLRXSHIKNRKA*KF*VCKFVWK*STSSFLRPDLHSSFN- 505
           +KILR  +    NI   T  +L  +HIK R    + V  FV+   +  +LR +    +  
Sbjct: 458 VKILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLRSEYGKDYEY 517

Query: 504 DGTVKIQDQHLDA 466
           D  VK+ D+HL A
Sbjct: 518 DAPVKLLDKHLHA 530


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 369 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 211
           + FVLS +  AD  L V   +    D SVR G+ R+Y A+    +NG    +N   N
Sbjct: 33  WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89


>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
          Length = 595

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 366 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 268
           N  LSFD W  D  LH+++    D   R+  SRV
Sbjct: 12  NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45


>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 449 KRGKEAASRCWSWILTVPSLKDECK 523
           K+ KE +S CWS I+  P L+ + K
Sbjct: 49  KKRKEVSSSCWSSIIMQPKLESKLK 73


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +2

Query: 248  WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCF 427
            W+    Y L    + +L A  +RI       HM +    LN+T  I        FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265

Query: 428  MFP 436
            + P
Sbjct: 1266 LPP 1268


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 SRSPLWTRTAGYTLLSPSRTDLSA 304
           SR+P+WT TAG T+L      L+A
Sbjct: 91  SRTPVWTATAGTTILQSIVLSLTA 114


>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   GGRSARPYSRPRPTRRAP 54
           GGR+A+PY  P P R+ P
Sbjct: 102 GGRTAKPYRPPPPPRKKP 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,130,072
Number of Sequences: 37544
Number of extensions: 410466
Number of successful extensions: 1204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)