Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0206
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                33   0.29 
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)                 31   1.2  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              30   2.0  
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                29   4.7  
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 348 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 175
           D W  A       +  D  +  G      A R    GE D  IND  N++ +++S R+  
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553

Query: 174 RERDQDNHGGFV 139
           +     NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565


>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
          Length = 155

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 441 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 352
           V G +  +C+KE   T+PL++FV  N  +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 178 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 357
           ++T  Q + DP + I+D+     + T   I  T     +++   G+D +     P  +  
Sbjct: 95  IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154

Query: 358 DEVKY-HKYYQWVCFVLFFQAILFY 429
           D+  +    Y  +CFV  F  ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +1

Query: 22  YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYI 201
           ++ P PT R+P    +  S+ GL+ + +   +    R ++  T     A++L +  ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707

Query: 202 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 303
           G  +D I      LAV  +   + + FTI   ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742


>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +2

Query: 314 RITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSC-----FMFPATCGKRGKEAASRC 478
           R  C   S+ M+K + K     I++GF++     +S         P T G+ G+      
Sbjct: 109 RDRCTARSSGMTKKRAKTRQDMILNGFLMITQPTKSTPKLRTHCHPYTSGRIGQYLEQND 168

Query: 479 WSWILTVPSLKDECKSG 529
             W LT P LKD+  SG
Sbjct: 169 -GW-LTTPELKDQLDSG 183


>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 372 IFNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDFIN 223
           +FN +    +W D       S  A+KS+R  ES  Y  ++VH      +N
Sbjct: 18  LFNNLNDTPLWKDRSFATTFSYVANKSIRKQES--YGLIKVHKKTSKILN 65


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 293 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 415
           ++S    ++  +  +A  S+D+  L ITNIIS F+L  SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 151 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 276
           V+I+   +LL+T  Q    P++     + +A++DT  ++  T
Sbjct: 4   VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,315,804
Number of Sequences: 59808
Number of extensions: 490158
Number of successful extensions: 1851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1849
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)