Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0206
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20300.1 68415.m02371 protein kinase family protein contains ...    31   0.72 
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   2.2  
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    29   2.9  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    29   2.9  
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    29   3.8  
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo...    28   5.1  
At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family p...    28   6.7  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   8.9  
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    27   8.9  

>At2g20300.1 68415.m02371 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 744

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +3

Query: 411 SSNPVLCSPLLVENVGRRPHQDVGPGS*LSHR*RTSASRVVKSYLSTISTRTCTLKTFTL 590
           SSN V   P L  ++ +RP    G GS  S   R+S S    S +S+++T   ++KTFTL
Sbjct: 289 SSNAV--GPALAPSINKRP----GAGSMFSSSARSSGS---DSLMSSMATCALSVKTFTL 339

Query: 591 SD 596
           S+
Sbjct: 340 SE 341


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 369 FNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDF-INDAVNRVTDVL 193
           F  VLS  + ++    ++ S+  +  V DGES V P   +   + +    DA N     L
Sbjct: 563 FMNVLSALILSEEFQGIVSSETGNNKVDDGESSVSPVPSMSGADSESRPKDAGNGDVSDL 622

Query: 192 SRRDEKRERDQDNHGGFVM 136
             ++ K +R   N+GG  +
Sbjct: 623 EVKNAKSDRGSINNGGLAL 641


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 309 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 157
           D++++ V++GE+  + A    +GE ++  +      D     DEKR+RD D
Sbjct: 23  DSSEEDVKEGEAEEHEAGEDEDGEEEYEEE-----DDDEEEEDEKRKRDAD 68


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 334 VGPHVEGQDEVKYHKYYQ------WVCFVLFFQAILFYVPRYL 444
           +G H E  D++ ++ Y+       WV F +FF   +FY P  L
Sbjct: 216 LGVHSE-MDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVL 257


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 7   RSARPYSRPRPTRRA-PAMFDVFGSVKGLLKLDSVCIDNN---VFRLH 138
           R    + +P P R+A P++ +  GS+KG LKL  +   N     F LH
Sbjct: 313 RGVNTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLH 360


>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
           similarity to Rab6 GTPase activating protein, GAPCenA
           [Homo sapiens] GI:12188746; contains Pfam profile
           PF00566: TBC domain
          Length = 882

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 276 SRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQDN 154
           SRV       NG+++ ++D  + + + LS  +E  E D+D+
Sbjct: 238 SRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDS 278


>At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like arabinogalactan
           protein FLA8 [Arabidopsis thaliana]
           gi|10880493|gb|AAG24276
          Length = 420

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 224 LMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNII 385
           L++++ P  T     +L+ P+  D++A SE +T  P S  +S     +N+T I+
Sbjct: 160 LLETKPPNITVLTVDSLIVPTGIDITA-SETLTPPPTSTSLSPPPAGINLTQIL 212


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 43  RRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYIGDPID 216
           RRAP    VF S +G  K +    + N F L +    I+++   +++ +  ++ + +D
Sbjct: 763 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELD 820


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 265 IYSTFTIPNRLIGRVGKDYVQPGV--GPHVEGQDEVKYHKYYQWVCFVLFFQAILFYVPR 438
           I+   ++   ++ R G + ++ GV  G H    D+  + +YY W   V++   +   +PR
Sbjct: 260 IHKRGSLSEPILQRDGLEEIEDGVVNGEHQIVDDDDDHQRYYYWKRLVIWAITLPLNLPR 319

Query: 439 YL 444
            L
Sbjct: 320 IL 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,378
Number of Sequences: 28952
Number of extensions: 330180
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)