Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0205
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.2  
SPBC216.06c |swi1||replication fork protection complex subunit S...    28   1.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.6  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   4.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   6.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
 Frame = +1

Query: 232 EEIKSTGNWNTEECKEYIK-----PLDKSF-------EILYGFPLNQILYINIFDKKDIF 375
           E+I++  NW+TEE  E++       +  +F       EIL G   N +  +NI      F
Sbjct: 242 EKIQNVPNWSTEEVVEWLMNAGLGSVAPNFAENEITGEILLGLDSNVLKELNITSFGKRF 301

Query: 376 NVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKVSISIQKS 501
            V  KI   K   DS ++  SL E Y    E + VS S   S
Sbjct: 302 EVLRKIQQLK---DSYEQ--SLYEEYPQFAEPISVSQSSDSS 338


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 395 RIL-MHTLKISFLSKIFIYKI*FNGKPYKISKDLSKGFMYSLHSSVFQLPVLFI 237
           R+L +H +++ ++   F+  + F+ KP K  +  S  + + L +SVF    L +
Sbjct: 362 RVLPIHKMQLLYVQSFFLEFMRFSSKPKKTEEIYSNDYSFGLAASVFDQRALIM 415


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 370  IFNVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKVSISIQKSLYCICFIEYANEDINV 549
            I ++  ++  E  + DSLKK   L+E Y       K+  S++   Y    ++   +DINV
Sbjct: 1104 IIDISDELQDESSSRDSLKKGIELIEDYYLSQSTSKLESSVEGKNY---LLKVKFKDINV 1160

Query: 550  N*SIH 564
            N  +H
Sbjct: 1161 NWDLH 1165


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 226 LYEEIK---STGNWNTEECKEYIKPLDKSFEILYGFPLNQ 336
           L +EIK     G W+ E+  ++++ L+K  + +Y F  N+
Sbjct: 25  LKKEIKRRNDQGGWSEEDESDFVELLEKELDKVYSFQKNK 64


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 84  YSFRKFW*QALMNLID*VCVFIHIY 10
           + FR+FW   L +L+  V +F HIY
Sbjct: 41  FHFRRFWTIWLKSLVIMVLLFTHIY 65


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 465  RKSKGKYINSKISLLYLFY*VCQ*RYKCKLKYSYFRNMMLMLIRVQY 605
            R   G YI   + LL +FY        C + Y+Y RN + +++ + Y
Sbjct: 1272 RTFTGLYIVHLLFLLTIFY-------PCPIAYTYVRNSIFLILSICY 1311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,077
Number of Sequences: 5004
Number of extensions: 54094
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)