Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0205
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_4149| Best HMM Match : VWA (HMM E-Value=0)                          28   6.9  
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)               28   6.9  
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 438 PCRSLFFISRKSKGKYINSKISLLYL 515
           P RSL+F  R +KG+ I +KI+L YL
Sbjct: 46  PTRSLYFDGRLAKGRVILNKIALSYL 71


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/59 (22%), Positives = 33/59 (55%)
 Frame = +1

Query: 316 YGFPLNQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKVSISI 492
           Y F ++ ++ ++I D+K +F  C+ +L     +  ++ Y  L ++  S+ E +K ++ +
Sbjct: 135 YDFLVSWLVILHIEDRKTLFKKCLDLLKPGGKI-YIEDYYKLADISPSIAEDLKEAVYV 192


>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1141

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 268 ECKEYIKPLDKSFEILYGFPLNQILYINIFDKKDIFNVCIKIL 396
           E  + ++P  K  ++L+G P++  L   I+  K  FN  + +L
Sbjct: 455 EGADKVRPCGKPIDVLFGIPVSNHLGQEIWSAKSTFNSILGLL 497


>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 394 LHEKITVDSLKKYPSLVEVYSSLVEKV 474
           +H +I  D+ +KY  L+E Y +++EK+
Sbjct: 23  VHRQIFRDTCQKYTKLLEWYKTIIEKI 49


>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 298 KSFEILY--GFPLNQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLV 465
           + FE+++  G  L   L  +++  K+    C K+LHE +      + PS   VYS LV
Sbjct: 768 EGFEVIFENGEKLVYKLKKSLYGLKESGRNCNKLLHESLMESGFNRNPSDHCVYSKLV 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,607
Number of Sequences: 59808
Number of extensions: 324784
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)