Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0205
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...    29   2.6  
U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...    29   2.6  
Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical p...    29   3.4  
U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine rece...    28   6.0  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 250 GNWNTEECKEYIKPLDKSFEILYGFPLNQILYIN 351
           G W+   CK+   P ++ F+  YGF   Q  Y N
Sbjct: 96  GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 129


>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 250 GNWNTEECKEYIKPLDKSFEILYGFPLNQILYIN 351
           G W+   CK+   P ++ F+  YGF   Q  Y N
Sbjct: 132 GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 165


>Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical
           protein T09A5.2a protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 358 DKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVK 477
           D KD FNVC+  +   +T  +   +  L+E Y + +EK K
Sbjct: 194 DTKDAFNVCMAEMRMMLTSKTTDFFRVLIERYKAEMEKRK 233


>U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein14 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -1

Query: 401 SCRILMHTLKISFLSKIFIYKI*FNGKPYKISKDLSKGFMYSLHSSVFQLPVLFISSYN 225
           SC IL+   + + ++  F++ I F+ K + + K +      S++ + F  PVLF + YN
Sbjct: 104 SCCILLAVDRCAEINPQFLFGIIFHKKVFPLVKFIVLAL--SIYVTFFTNPVLFTAKYN 160


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   GFLVNMDKNTNLINQIHKCLLPKLSKGIDETENPIE 108
           GF+ + D + N + +I + +LP L K +   ENPIE
Sbjct: 478 GFVGSADFSGNRLKEIQRIVLPNL-KSLTINENPIE 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,564
Number of Sequences: 27780
Number of extensions: 276970
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)