Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0201
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 34 0.019
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 30 0.40
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 29 0.53
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.70
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.93
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 27 2.8
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 3.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 5.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.6
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 34.3 bits (75), Expect = 0.019
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 286 SAQPPSQLAVGSLPDAPVAGGSSVAEGEAV--ESNDKGSADSLASPTTGRAPLSSLRCVL 459
S+ PS VGSL + G+ + EG + +S+ + S+DS+ + C
Sbjct: 182 SSGSPSSRVVGSLQGSYCPSGTHLHEGSLLLEDSSARHSSDSVHEYLVKKPSNCDCECHA 241
Query: 460 CYNSLASLTGTPKLMECLHSI 522
++S + +GTP +E +HS+
Sbjct: 242 HFSSFPTHSGTPDDIEHIHSV 262
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.9 bits (64), Expect = 0.40
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 436 LSSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKIEMIKSANSTEFLGAERVTILCP 615
L+ +CV+C +S +L+ TP C H C C I SA LG T CP
Sbjct: 201 LADYKCVICLDSPENLSCTP----CGHIFCNFC-------ILSA-----LGTTAATQKCP 244
Query: 616 ICR 624
+CR
Sbjct: 245 VCR 247
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.5 bits (63), Expect = 0.53
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 439 SSLRCVLCYNSLASLTGTPKLMECLHSICETCLK 540
SSLRC++C+ + P + C H+ C C++
Sbjct: 25 SSLRCLICHEYFRA----PLITSCSHTFCSFCIR 54
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 29.1 bits (62), Expect = 0.70
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 232 PLLGVTIKEEVPDDLAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAVESNDKGSADSLA 411
P+ G+TI D + P + PP + + P P A SS A A ++ + +
Sbjct: 41 PVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAP 100
Query: 412 SP 417
P
Sbjct: 101 QP 102
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 199 EDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQLAVGSLPDA-PVAGGSSVA 360
++++R + D G L P +A P A PPS +LP A P AG ++++
Sbjct: 1863 KELKRWVNDDGSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAIS 1917
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 466 CSTAHISN*IEALGPWWAMPGNLQNL 389
C+T HIS A GPW G+LQN+
Sbjct: 587 CTTDHIS----AAGPWLKYRGHLQNI 608
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 247 TIKEEVPDDLAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAVESNDKGSADSLASPTTG 426
+I +P E + + S+PD P A SS + V N+K + ++ A+P +
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPD-PSAKASSPVTSKGVSINEKSAVNNYATPLSK 610
Query: 427 RAP 435
P
Sbjct: 611 PQP 613
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 451 CVLCYNSLASLTGTPKLMECLHSICETCLKIKIEMIKSAN 570
C +C N P L+ C H+ C CL I+ K N
Sbjct: 877 CPICCNEPIQ---NPLLLNCKHACCGDCLSEHIQYQKRRN 913
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -2
Query: 172 PFTKFSNLRYGALTV*RC-----IFTTTTFTSVSEDVDI 71
PF + NLR+ L + RC F TT TS +E+ D+
Sbjct: 911 PFVRALNLRFQDLLISRCRKFLSFFKTTILTSGNENNDL 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,841
Number of Sequences: 5004
Number of extensions: 70476
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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