Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0201
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   1.9  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   5.7  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    24   5.7  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 178 VNFQPSGEDIERALMDLGPLLGVTI-KEEVPDDLAEPSAQPPSQL 309
           +N   S E+ +R + ++     V + K E+PD+  EP  + P Q+
Sbjct: 617 INTLVSEEEGQRLVREMKRKFSVIVDKVELPDESGEPVVENPKQI 661


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 514 HSICETCLKIKIEMIKSANSTEFLGAERV 600
           H+I E C ++ IE+I +A+ T +   ER+
Sbjct: 112 HNISEMCKELGIEVISAASHTLY-NLERI 139


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 346 HLRLVHQANSQQQVGRVAVH 287
           H +  HQ N QQQ  R+ +H
Sbjct: 273 HQQWPHQQNGQQQQQRMGIH 292


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,519
Number of Sequences: 2352
Number of extensions: 20850
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)