Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0201
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 165 VNGKRELPTEWRRYRTGPDGPGAASW 242
           VNGKR  PT W     G  G  A SW
Sbjct: 154 VNGKRVPPTNW----VGVFGGSAWSW 175


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 165 VNGKRELPTEWRRYRTGPDGPGAASW 242
           VNGKR  PT W     G  G  A SW
Sbjct: 154 VNGKRVPPTNW----VGVFGGSAWSW 175


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 382 NDKGSADSLASPTTGRAPLSSLRCVLCYNSLAS 480
           ++  +AD  +      APL S  C  C  +LAS
Sbjct: 522 SENEAADFFSGSCAPGAPLDSKLCQQCVGNLAS 554


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 382 NDKGSADSLASPTTGRAPLSSLRCVLCYNSLAS 480
           ++  +AD  +      APL S  C  C  +LAS
Sbjct: 522 SENEAADFFSGSCAPGAPLDSKLCQQCVGNLAS 554


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 382 NDKGSADSLASPTTGRAPLSSLRCVLCYNSLAS 480
           ++  +AD  +      APL S  C  C  +LAS
Sbjct: 522 SENEAADFFSGSCAPGAPLDSKLCQQCVGNLAS 554


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 331 HQANSQQQV---GRVAVHLARPDHR 266
           HQ+  QQ+     RV  HL R DH+
Sbjct: 492 HQSQQQQEEQTQSRVRAHLKRLDHQ 516


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 QVDLQWQKGKQWK 379
           +VDL++  GK+WK
Sbjct: 83  EVDLEFYLGKEWK 95


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 178 VNFQPSGEDIERAL 219
           VNF P+ +DIE+ L
Sbjct: 306 VNFYPNNQDIEKFL 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,055
Number of Sequences: 438
Number of extensions: 4897
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)