Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0201
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 34 0.087
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 33 0.20
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 31 0.81
At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At3g29270.2 68416.m03675 expressed protein 30 1.4
At3g29270.1 68416.m03674 expressed protein 30 1.4
At1g49270.1 68414.m05524 protein kinase family protein contains ... 30 1.4
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 30 1.9
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 29 2.5
At3g51580.1 68416.m05650 expressed protein 29 3.3
At4g11480.1 68417.m01846 protein kinase family protein contains ... 29 4.3
At1g78140.1 68414.m09106 methyltransferase-related similar to Pr... 29 4.3
At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)... 28 7.6
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 28 7.6
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 28 7.6
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 28 7.6
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 28 7.6
At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid t... 28 7.6
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 28 7.6
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 28 7.6
At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 28 7.6
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 28 7.6
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At2g25660.1 68415.m03075 expressed protein 27 10.0
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 34.3 bits (75), Expect = 0.087
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Frame = +1
Query: 409 ASPTTGRAPL-SSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI---EMIKSANS- 573
A+P T RA L +C +C + + TP C H+ C+ CL+ K +++ S
Sbjct: 513 ANPNTMRARLLKEFKCQICQKVMTNPVTTP----CAHNFCKACLESKFAGTALVRERGSG 568
Query: 574 TEFLGAERVTILCPICR---FECQQANMIDQRF--FIEKMALEQVGNNGALSGDQQCN 732
L +++ + CP C E Q +++ IEK+ ++ N + QC+
Sbjct: 569 GRKLRSQKSVMKCPCCPTDIAEFVQNPQVNREVAEVIEKLKKQEEEENAKSLDEGQCS 626
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Frame = +1
Query: 271 DLAEPSAQP----PSQLAVGSLPD-------APVAGGSSVAEGEAVESNDKGSADSLASP 417
DL++PSAQP PSQ L D APV GS+ + +++ N+ A SL SP
Sbjct: 665 DLSQPSAQPGAMQPSQAGADILMDLLSIGTPAPVQNGSANGDLLSIQDNNAPIAPSLTSP 724
Query: 418 T 420
T
Sbjct: 725 T 725
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 436 LSSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI----EMIKSANSTEFLGAERVT 603
L C +C L+ TP C H+ C+ CL+ K ++ + +N L A++
Sbjct: 490 LKEFSCQICREVLSLPVTTP----CAHNFCKACLEAKFAGITQLRERSNGGRKLRAKKNI 545
Query: 604 ILCPIC 621
+ CP C
Sbjct: 546 MTCPCC 551
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 436 LSSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI----EMIKSANSTEFLGAERVT 603
L C +C L+ TP C H+ C+ CL+ K ++ +N L A++
Sbjct: 493 LKEFSCQICRKVLSLPVTTP----CAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNI 548
Query: 604 ILCPIC 621
+ CP C
Sbjct: 549 MTCPCC 554
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 436 LSSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI----EMIKSANSTEFLGAERVT 603
L C +C L+ TP C H+ C+ CL+ K ++ +N L A++
Sbjct: 493 LKEFSCQICRKVLSLPVTTP----CAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNI 548
Query: 604 ILCPIC 621
+ CP C
Sbjct: 549 MTCPCC 554
>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 261
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCL 537
L C +C+ S + P ++ C H+IC+ CL
Sbjct: 44 LECPICWESFNVVENVPYVLWCGHTICKYCL 74
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 508 CLHSICETCLKIKIEMIKSANSTEFLGAERVTILCPICRFE 630
C H C C+K I+++ S S +R ++ CP+C+ E
Sbjct: 38 CFHKFCFNCIKQWIKVVSSKAS-----KQRSSVTCPLCKTE 73
>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 270
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCL 537
L C +C+ S + P ++ C H++C+ C+
Sbjct: 43 LECPICWESFNIVENVPYVLWCGHTLCQNCV 73
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Frame = +1
Query: 334 PVAGGSSVAEGEAVESNDKGSADSLASPTTGRAPL-SSLRCVLCYNSLASLTGTPKLMEC 510
P A SV E + A A T RA L +C +C L TP C
Sbjct: 475 PPASKKSVNVLAPEERKNLRKAIKAAHSNTMRARLLKEFKCQICQQVLTLPVTTP----C 530
Query: 511 LHSICETCLKIKI--EMIKSANST--EFLGAERVTILCPIC 621
H+ C+ CL+ K + + ST L + + + CP C
Sbjct: 531 AHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCC 571
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Frame = +1
Query: 334 PVAGGSSVAEGEAVESNDKGSADSLASPTTGRAPL-SSLRCVLCYNSLASLTGTPKLMEC 510
P A SV E + A A T RA L +C +C L TP C
Sbjct: 478 PPASKKSVNVLAPEERKNLRKAIKAAHSNTMRARLLKEFKCQICQQVLTLPVTTP----C 533
Query: 511 LHSICETCLKIKI--EMIKSANST--EFLGAERVTILCPIC 621
H+ C+ CL+ K + + ST L + + + CP C
Sbjct: 534 AHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCC 574
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCL 537
L C +C+ S + P ++ C H++C+ C+
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCI 82
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCL 537
L C +C+ S + P ++ C H++C+ C+
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCI 82
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +1
Query: 274 LAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAVESNDKGS--ADSLASPTTGRAPLSSL 447
++ P PP P APV+GG++V + + SN A SL P A L
Sbjct: 262 VSSPPPPPPGNWQPMPSPPAPVSGGANVIQSGEMSSNFSSGPYAPSLPPPHPSVA-LGFN 320
Query: 448 RCVLCYNSLASLT 486
Y LAS T
Sbjct: 321 NSTFTYEELASAT 333
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 451 CVLCYNSLASLTGTPKLMECLHSICETCLKIKIEMIKSANSTEFLGAERVTILCPICRFE 630
C +C+ P L++C H C+ CL +M +++ T T+ CP CR
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCLS---KMFSTSSDT--------TLTCPRCRHV 58
Query: 631 CQQANMID-QRFFIEKMALEQVGNNGA 708
N + R +AL + GA
Sbjct: 59 SVVGNSVQGLRKNYAMLALIHAASGGA 85
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCLKIK 546
L C +C N T + ECLH+ C +C++ K
Sbjct: 14 LACPICTNPFKDAT---TISECLHTFCRSCIRNK 44
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 445 LRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI 549
L C +C N L T + ECLH+ C C+ KI
Sbjct: 14 LSCSICDNILRDAT---TISECLHTFCRKCIYEKI 45
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 451 CVLCYNSLASLTGTPKLMECLHSICETCL 537
C +C S + P+++ C H+ CE CL
Sbjct: 6 CPVCLQSYDGESTVPRVLACGHTACEECL 34
>At3g51580.1 68416.m05650 expressed protein
Length = 390
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 289 AQPPSQLAVGSLPDAPVAGGSSVAEGEAVESNDKGSADSLASPT-TGRAPLSSLRCVLCY 465
A PP L G P +A+ A +DKGS++S + T G++ + L
Sbjct: 131 APPPKSLESGKNETEPGKESPPLAKDPAKGKDDKGSSESASVDTCVGKSNICRTENSLVA 190
Query: 466 NSLASLTGTPKLMECLHSICETCLKIKI 549
+L+ G + + + ET LK KI
Sbjct: 191 CTLSIDKGAANWLILVQNEGETSLKAKI 218
>At4g11480.1 68417.m01846 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 656
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 499 LMECLHSI----CETCLKIKIEMIKSANSTEFLGAERVTILCPICRF 627
LM+C+ I CETC++ + M +S F+G TI P+C F
Sbjct: 189 LMQCIRGISSMECETCIRDNVRMYQSC-CNGFIGG---TIRKPVCFF 231
>At1g78140.1 68414.m09106 methyltransferase-related similar to
Probable delta(24)-sterol C-methyltransferase
(Swiss-Prot:O14321) [Schizosaccharomyces pombe]; similar
to C5-O-methyltransferase (GI:5921167) [Streptomyces
avermitilis]; similar to S-adenosyl-methionine-sterol-C-
methyltransferase (GI:3560474) [Nicotiana tabacum]
Length = 355
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +1
Query: 370 AVESNDKGSADS-LASPTTGRAPLSSLRCVLCYNSLASLTGTPKLMECLHS----ICETC 534
+VE+N + D + R L C +CYNSLA ++ L+E S C TC
Sbjct: 50 SVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTC 109
>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
gibberellin-responsive protein 4 identical to SP|P46690
Gibberellin-regulated protein 4 precursor {Arabidopsis
thaliana}
Length = 106
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 474 SKLNWNTQAHGMSAFNLRDLPQNQDRDDKKCQQHR--ISWCRK 596
S + W+ + +G + P DR KK Q H+ I++C K
Sbjct: 29 SNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNK 71
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 193 SGEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQ-LAVGSLPDAPVAGGSSVAEGE 369
S +D E + +G + + +E D L+ P Q + S P+ AGG+ EG+
Sbjct: 754 SEKDPEDVVKTVGEKVQLAKEEGANDVLSTPDKSVSQQPIGSASAPENGTAGGNPNIEGK 813
Query: 370 AVESNDKGSADSLASPTTGRAPLSSL 447
+ +G+ D RA +S++
Sbjct: 814 KEKDICEGTKDKYNIEKLKRAAISAI 839
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 193 SGEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQ-LAVGSLPDAPVAGGSSVAEGE 369
S +D E + +G + + +E D L+ P Q + S P+ AGG+ EG+
Sbjct: 752 SEKDPEDVVKTVGEKVQLAKEEGANDVLSTPDKSVSQQPIGSASAPENGTAGGNPNIEGK 811
Query: 370 AVESNDKGSADSLASPTTGRAPLSSL 447
+ +G+ D RA +S++
Sbjct: 812 KEKDICEGTKDKYNIEKLKRAAISAI 837
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 193 SGEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQ-LAVGSLPDAPVAGGSSVAEGE 369
S +D E + +G + + +E D L+ P Q + S P+ AGG+ EG+
Sbjct: 754 SEKDPEDVVKTVGEKVQLAKEEGANDVLSTPDKSVSQQPIGSASAPENGTAGGNPNIEGK 813
Query: 370 AVESNDKGSADSLASPTTGRAPLSSL 447
+ +G+ D RA +S++
Sbjct: 814 KEKDICEGTKDKYNIEKLKRAAISAI 839
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 193 SGEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQ-LAVGSLPDAPVAGGSSVAEGE 369
S +D E + +G + + +E D L+ P Q + S P+ AGG+ EG+
Sbjct: 754 SEKDPEDVVKTVGEKVQLAKEEGANDVLSTPDKSVSQQPIGSASAPENGTAGGNPNIEGK 813
Query: 370 AVESNDKGSADSLASPTTGRAPLSSL 447
+ +G+ D RA +S++
Sbjct: 814 KEKDICEGTKDKYNIEKLKRAAISAI 839
>At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile: PF00234 protease inhibitor/seed storage/LTP
family
Length = 133
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 412 SPTTGRAPLSSLRCVLCYNSLASLT----GTPKLMEC 510
+PTTG P +L+ +C N+L L GTP + C
Sbjct: 44 TPTTGTCPKDALKVGVCVNALNLLNGLTPGTPPVTPC 80
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 265 PDDLAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAVESN-DKGSADSLASPTTGRAPLS 441
PD + S+ P S +V S PD+ + SS +V S+ S ++ +SP + S
Sbjct: 458 PDSSSSVSSSPDSSSSVSSSPDSYSSFSSSPDSSSSVSSSLFSSSRENSSSPDYSNSVSS 517
Query: 442 SL 447
SL
Sbjct: 518 SL 519
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Frame = +1
Query: 451 CVLCYNSLASLTGTPKLMECLHSICETCLKIKI---EMIKSANSTEFLG--AERVTILCP 615
C +CY + + G C H +C + K E + A E+ +E + + P
Sbjct: 406 CRVCYQKVDTNYGQ---YSCYHEVCSYVVHSKCATNENVWDAKELEWESEESEEIEDILP 462
Query: 616 ICRFECQQANMIDQRFFIEKMALEQVGNNGALSGDQQCNSC 738
+ + C Q + F K L+ NG ++QC +C
Sbjct: 463 LKKVGCGQI-----KHFSHKHPLKLKKYNGVRDAEKQCQAC 498
>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 420
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 436 LSSLRCVLCYNSLASLTGTPKLMECLHSICETCLKIKI 549
++ + C LC L T + ECLH+ C C+ KI
Sbjct: 15 VACMTCPLCDKLLRDAT---TISECLHTFCRKCIYEKI 49
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 196 GEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAV 375
GEDIE L+D +G+ +++ P + A +G+L P+ ++ GE V
Sbjct: 426 GEDIEHQLID----IGMRVRDARPQLVRVSWALLIDPALLGNLFLHPILSAAAWVSGEYV 481
Query: 376 E--SNDKGSADSLASPTTGRAPLSSLRCVLCYNSLASL 483
E N + ++L P T P S++ + +++ L
Sbjct: 482 EFSKNPYETVEALLQPRTDLLP-PSIKAIYIHSAFKVL 518
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 196 GEDIERALMDLGPLLGVTIKEEVPDDLAEPSAQPPSQLAVGSLPDAPVAGGSSVAEGEAV 375
GEDIE L+D +G+ +++ P + A +G+L P+ ++ GE V
Sbjct: 426 GEDIEHQLID----IGMRVRDARPQLVRVSWALLIDPALLGNLFLHPILSAAAWVSGEYV 481
Query: 376 E--SNDKGSADSLASPTTGRAPLSSLRCVLCYNSLASL 483
E N + ++L P T P S++ + +++ L
Sbjct: 482 EFSKNPYETVEALLQPRTDLLP-PSIKAIYIHSAFKVL 518
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 361 EGEAVESNDKGSADSLASPTTGRAPLSSLRCVLCYNSLASLTGTPKLMECLHSICETCLK 540
E + ++ ++K +D + P + L C +C + P C HS C+ CL+
Sbjct: 695 EEKKIDKDEKSLSDHVVLPCIDKLR-DELSCAICLE----ICFEPSTTTCGHSFCKKCLR 749
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 241 GVTIKEEVPDDLAEP--SAQPPSQLAV-GSLPDAPVAGGSSVAEGEAVESNDKG 393
G+ +K EV + A+ S Q +QL + GS+ ++G +++GEA +DKG
Sbjct: 1761 GIELKCEVLEVRAKNFLSCQVDTQLQITGSMLQPTISGNIKLSQGEAYLPHDKG 1814
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,488
Number of Sequences: 28952
Number of extensions: 393514
Number of successful extensions: 1155
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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