Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   2.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.2  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 579 RLLEKCFNPRAEFGTRQRSHIKLIFYFNNLCQCFKKRRRVTGSIFKMKV 433
           + +EK    + E   ++ +     +  N+L    +KRR V  SIFK++V
Sbjct: 49  KAVEKLLTEQKELAEKEEAETLKRYKLNDL----EKRREVYESIFKVEV 93


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 579 RLLEKCFNPRAEFGTRQRSHIKLIFYFNNLCQCFKKRRRVTGSIFKMKV 433
           + +EK    + E   ++ +     +  N+L    +KRR V  SIFK++V
Sbjct: 209 KAVEKLLTEQKELAEKEEAETLKRYKLNDL----EKRREVYESIFKVEV 253


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 579 RLLEKCFNPRAEFGTRQRSHIKLIFYFNNLCQCFKKRRRVTGSIFKMKV 433
           + +EK    + E   ++ +     +  N+L    +KRR V  SIFK++V
Sbjct: 209 KAVEKLLTEQKELAEKEEAETLKRYKLNDL----EKRREVYESIFKVEV 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,928
Number of Sequences: 336
Number of extensions: 2266
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)