Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   1.8  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.2  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   4.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   9.7  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.7  

>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 83  KNQLLSLKIQKLKYKLPSLKFQKKKNL 3
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 199 VFWGYIVLFGLWYSGYLVVTNW 264
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 569 KNVLTLVPNSARGNDHTLN*YFTLTICVSVLKSGVAS 459
           K V+ L P+S R     LN YF  T+   V K+G A+
Sbjct: 154 KRVVDLYPSSLRTKIDELNDYFYDTVNNGVYKTGFAT 190


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 135 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKP 4
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTP 490


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 117 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 4
           D +   +DIK + E +   +DSK +V  TV EIS   +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,368
Number of Sequences: 5004
Number of extensions: 38565
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)