Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0559 + 18516732-18516746,18516893-18517330                       34   0.087
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    31   1.1  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    29   3.3  
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    29   3.3  
08_02_1167 + 24847689-24848156                                         28   5.7  
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382...    28   5.7  

>09_04_0559 + 18516732-18516746,18516893-18517330
          Length = 150

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
 Frame = -3

Query: 252 DEVPAIP-EAKKDDIAPEDSDIAXXXXXXXXXXXXXXXEAKSSEIPDAEAKSADIKVE-- 82
           +E PA P EA  ++ AP ++++A               E K +E   AE ++   K E  
Sbjct: 35  EETPAAPAEAVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVA 94

Query: 81  -EPAA--QPEDSKTEVQATVAEISKEEK 7
            EPAA  + E  + E  A VAE  KEE+
Sbjct: 95  PEPAAAAEAEAKEAEPAAQVAEEVKEEE 122


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 129 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEISKEEKPS 1
           +E P AEA S + K EEP   AA  E +K E +A  A  ++E KP+
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAP-AEEAKPA 211


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 521 CDRCLVPNSARGLKHFSSKRTQAA 592
           C RCLVP    G KHF S RT+ A
Sbjct: 252 CGRCLVPWHLHG-KHFPSSRTRRA 274


>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 38  ACTSVFESSG*AAGSSTLISADFASASGISDDF 136
           +CT +F+SS  +A  +  ++A FA AS   D+F
Sbjct: 64  SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96


>08_02_1167 + 24847689-24848156
          Length = 155

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 138 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 37
           AK  E P+AEA++A   VEE AA P +   E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140


>07_01_0513 +
           3828196-3828309,3828408-3828722,3828823-3828879,
           3829668-3829826,3829918-3830028,3830173-3830259,
           3830359-3830591,3830808-3830886,3831173-3831316,
           3831529-3831568,3831667-3831729,3832193-3832224,
           3832320-3832361,3832444-3832557
          Length = 529

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = -3

Query: 111 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISK--EEK 7
           E++S DIK  + +AQP  +K E  VQAT++ + K  EEK
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEK 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,444
Number of Sequences: 37544
Number of extensions: 238726
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)