Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 34   0.089
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  29   2.5  
SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41)             28   7.7  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 126 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI 22
           E P  EA+S D KVE P  + E  + EV+ATV E+
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEV 56


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 132 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEE 10
           ++E+P  +A ++  + E PAA+PE +  E +A V + + EE
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE 627



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 114  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP 4
            A  + A++ +EE   Q ED++  V+   A + K E P
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAP 1208


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 5   GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 136
           G SS ++    +C+SVFE +  A  SS L  AD + +  IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541


>SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41)
          Length = 548

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 584 VCVYLKNVLTLVPNSARGNDHTLN*YFTLTICVSVL 477
           VC  + NVL +V    RG   T + YF L + ++ L
Sbjct: 33  VCGLIGNVLVIVVVKCRGKKRTFHDYFLLNLAIADL 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,185
Number of Sequences: 59808
Number of extensions: 286261
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)