Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-P...    30   3.2  
AY052048-1|AAK93472.1|  537|Drosophila melanogaster LP06937p pro...    29   5.6  
AE014297-2561|AAN13783.1|  537|Drosophila melanogaster CG7702-PB...    29   5.6  
AE014297-2560|AAF55580.1|  537|Drosophila melanogaster CG7702-PA...    29   5.6  
AE014297-674|AAF54169.1|  549|Drosophila melanogaster CG11094-PA...    28   9.8  

>AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-PA
            protein.
          Length = 9196

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 135  KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKE 13
            KSS  P+ + KS + K E+  A+P+DS   V  T   I KE
Sbjct: 6359 KSSLHPEEKPKSPEKKDEKVLAKPDDSSKSVVETDKPIPKE 6399


>AY052048-1|AAK93472.1|  537|Drosophila melanogaster LP06937p
           protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 444 KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 340
           K K+LLL +A AA+ LA  V  + + +P QP+  +
Sbjct: 2   KHKLLLLFLAGAALLLATEVRSQHEDIPYQPVSNI 36


>AE014297-2561|AAN13783.1|  537|Drosophila melanogaster CG7702-PB,
           isoform B protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 444 KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 340
           K K+LLL +A AA+ LA  V  + + +P QP+  +
Sbjct: 2   KHKLLLLFLAGAALLLATEVRSQHEDIPYQPVSNI 36


>AE014297-2560|AAF55580.1|  537|Drosophila melanogaster CG7702-PA,
           isoform A protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 444 KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 340
           K K+LLL +A AA+ LA  V  + + +P QP+  +
Sbjct: 2   KHKLLLLFLAGAALLLATEVRSQHEDIPYQPVSNI 36


>AE014297-674|AAF54169.1|  549|Drosophila melanogaster CG11094-PA,
           isoform A protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 105 KSADIKVEEPAAQPEDSKTEVQATVAEI 22
           K AD  +EE + + E+++ E+  TVA+I
Sbjct: 382 KDADANIEEASRRIEEARVEINRTVAQI 409


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,878,654
Number of Sequences: 53049
Number of extensions: 411251
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)