Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    29   2.9  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   5.1  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   5.1  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical
           protein F09E5.2 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 623 TN*SNRSHCHEQLVCVYLKNVLTLVPNSARGNDHTLN*YFTLTI 492
           TN  +RSHC ++ + + +  V+  +P S  G  H L  Y  + I
Sbjct: 38  TNQYSRSHCFQETLDLDICTVVPWIPRSIFGKGHALCAYLKMII 81


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -3

Query: 135 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPS 1
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P+
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPA 175


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 405 VSLAMPVAEEKDVVPAQPIL 346
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 405 VSLAMPVAEEKDVVPAQPIL 346
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 405 VSLAMPVAEEKDVVPAQPIL 346
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 405 VSLAMPVAEEKDVVPAQPIL 346
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 119 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 18
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,496
Number of Sequences: 27780
Number of extensions: 216693
Number of successful extensions: 563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)