Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0200
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    32   0.39 
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    29   2.1  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   3.6  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    29   3.6  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    26   4.2  
At3g49990.1 68416.m05466 expressed protein                             28   4.8  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   8.4  

>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +2

Query: 314 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 418
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 249 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXEAKSSEIPDAEAKSADIKV-EEPA 73
           E P + E KKD+ AP ++ +                  K  E+ + + + A + V EE  
Sbjct: 73  ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129

Query: 72  AQPEDSKTEVQATV-AEISKEEK 7
            + E+ K  V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 252 DEVPAIPEAKKDDIAPE 202
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 120 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEK 7
           P  E K  + K EE   + E+ KTE ++  AE  +EEK
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEK 160


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 26.2 bits (55), Expect(2) = 4.2
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 126 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKP 4
           E+P  E+K  ++ V+  +A+PE  S+++ + T  E + E KP
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKP 149



 Score = 20.6 bits (41), Expect(2) = 4.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 237 IPEAKKDDIAPEDS 196
           +PE  K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 123 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEK 7
           +P   A+  D+K E P A+P   KT  Q +  E  KE K
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE-KKERK 459


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 116 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 3
           M K+N+ + K+K ++L LK  K  YK  + K Q +  L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 150 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 236
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,263
Number of Sequences: 28952
Number of extensions: 197923
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)