Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0198
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    26   0.11 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.14 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   2.3  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    20   5.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    20   5.4  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.8 bits (54), Expect = 0.11
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 160 WNSHTTTPNGRRLDALVDDLAFDIVAPLTP 249
           +N H   PNG  + +L+D++++  +AP  P
Sbjct: 512 YNRHLVAPNGDHVISLIDEISY--MAPPAP 539


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 121 QSSPCRAAPRYHCLERSYPVE 59
           Q++ C  APRYH L+ + PV+
Sbjct: 300 QTAICFKAPRYHTLDITEPVK 320


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 165 VPPDVFTI*VARQNDRAPHAEQR 97
           +PP+  T   ++QN+++P  +QR
Sbjct: 680 LPPESPTRDKSKQNEKSPSPQQR 702


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 57  INGRDNDRRVS 25
           +NG DN RR S
Sbjct: 227 VNGSDNSRRAS 237


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 138 VARQNDRAPHAEQRLDITA*NDLIRWKINGRDND 37
           V+  +DR    E + D T  +  I+ + NG+D D
Sbjct: 164 VSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLD 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,979
Number of Sequences: 336
Number of extensions: 1256
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)