Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0198
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    29   0.22 
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   1.5  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   2.0  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   2.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   2.0  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   3.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   4.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    23   8.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    23   8.3  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.22
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 58  LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 189
           L P+K+     +E +   G   IL  D     + WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 13  ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGR 192
           I L  H P   +SV +  D I+ S + +++L    SV    D   +  RW      P   
Sbjct: 52  IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110

Query: 193 RLDALVD 213
            LDA +D
Sbjct: 111 NLDATMD 117


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 64  PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHIRWNSHTTTPNG 189
           PDK+    + E + G+G+  I      D     + W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   SVPNLTDGTRADRYRVRL 56
           ++PNLTD  R + YR R+
Sbjct: 154 TIPNLTDNERVEMYRRRI 171


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 286 YPGDVRYLAGSESGLA 239
           YPGD++Y  G ES +A
Sbjct: 244 YPGDIKYATGYESTVA 259


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 19  LTGHAPIVIASVYLPPDKIVLSSDIE 96
           L GHA  + A  + P   ++LS+D+E
Sbjct: 225 LRGHAAWIFAVAFNPVGDLLLSADVE 250


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 97  PRYHCLERSYPVEDKRTR*RSAR 29
           PRY C+ R  P+E+     R+ R
Sbjct: 375 PRYACVHRDRPIEESLLEFRNMR 397


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 146 QFRSPARMTELPMPSSASISLLRTI 72
           +F S + +T +PMPS+ S  L+ +I
Sbjct: 801 EFGSSSSLTVIPMPSNESSDLVFSI 825


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 115 SSVILAGDLNCKHIRWNSHTTTPN--GRRLDALVDDLAFDIVAPLTPTHYPLNIAHR 279
           S ++LAG   C +I W    T+P+   +   +++ +L F     +   H   ++  R
Sbjct: 661 SEILLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRER 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,290
Number of Sequences: 5004
Number of extensions: 22977
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)