Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0198
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 29 0.77
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167 28 1.3
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 27 3.1
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135... 27 3.1
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 26 5.4
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 26 5.4
07_03_0477 + 18552568-18553203 26 7.1
06_03_1236 - 28597863-28598375,28598745-28598890,28599014-285992... 26 7.1
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 26 7.1
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 25 9.4
01_06_1044 + 34082801-34084339 25 9.4
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 13 ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 189
I L+G I+ ++ ++PP + ++ ++ALL G ++ G++ +R H T
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225
Query: 190 RRLDALVDDLAFDIVAP 240
L A+V ++ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240
>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
Length = 422
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 160 WNSHTTTPNGRRLDALVDD 216
W SH T GRRLDA++ D
Sbjct: 395 WTSHMTPEMGRRLDAILRD 413
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 149 LQFRSPARMTELPMPSSASISLLR-TILSGG 60
L+ RS LP P +ASI +LR T++ GG
Sbjct: 549 LRKRSKVLQRSLPRPPAASIEILRQTLIKGG 579
>01_06_1027 +
33912773-33912816,33913245-33913401,33913492-33913589,
33913680-33913775,33914422-33914681,33914778-33915088,
33915154-33915297,33915452-33915589,33915674-33915721,
33916328-33916408,33916705-33916864,33917411-33917532
Length = 552
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 121 VILAGDLNCKHIRWNSHTTTPNGRRLDALVDD 216
VIL GDLNC H + H N R +++
Sbjct: 440 VILTGDLNCAHQEIDIHDPAGNRRSAGFTIEE 471
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 136 DLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDI 288
D N +W +HT G R+ D++ + A LTP H+ L + D+
Sbjct: 511 DRNTTLQKW-AHTQIAVGTRMACYHDEVKISLPALLTPQHHLLFTFYHVDL 560
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 148 KHIRWNSHTTTPNG-RRLDALVDDL 219
K I++N ++TPNG +RLDA D+
Sbjct: 317 KSIKYNVWSSTPNGNKRLDAAYSDV 341
>07_03_0477 + 18552568-18553203
Length = 211
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 158 LMCLQFRSP--ARMTELPMPSSASISLLRTILSGGR 57
++C FRSP +R +E PSS+S + SGGR
Sbjct: 170 VLCKIFRSPEPSRRSESGSPSSSSSASASPSCSGGR 205
>06_03_1236 -
28597863-28598375,28598745-28598890,28599014-28599247,
28599421-28599688
Length = 386
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Frame = +1
Query: 64 PDKIVLSSDIEALLGMGSSVILAGDL----------NCKHIRWNSHTTTPNGRRLDAL-- 207
PD SSD+ A+ +G S+ G+L KH+ + P GR D L
Sbjct: 26 PDAAGNSSDVTAIYSLGDSITDTGNLIKEAPPGMFETIKHLPYGITFGYPTGRCSDGLLM 85
Query: 208 VDDLAFDIVAP 240
+D LA D+ P
Sbjct: 86 IDFLAQDLGLP 96
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 28 HAPIVIASVYLPPDKIVLSSDIEALLGMGSSVIL 129
H P +A ++P +SS ++ L+G+G+ I+
Sbjct: 188 HKPREVAYQFIPDVVASISSTVQELIGLGARTIM 221
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRL----DALVDDLAFDIVA- 237
IV ++ IE +LG + + D KH+ NGR+L DA + D F A
Sbjct: 360 IVATTRIETMLGDTAIAVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAV 419
Query: 238 PLTPTHYP 261
+TP H P
Sbjct: 420 KITPAHDP 427
>01_06_1044 + 34082801-34084339
Length = 512
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 103 LGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDL 219
LG+ VI A N +HI + + P G +L++DL
Sbjct: 80 LGLTGGVITANVANVEHILKTNFSNYPKGELSVSLLEDL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,397
Number of Sequences: 37544
Number of extensions: 187008
Number of successful extensions: 444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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