Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0198
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 34 0.019
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 34 0.025
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 33 0.033
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 31 0.17
AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical ... 31 0.17
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 31 0.23
AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical ... 29 0.53
Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical p... 28 1.2
Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical pr... 28 1.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 1.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 1.2
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 1.6
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 27 3.8
AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical ... 26 5.0
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 25 8.7
AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical ... 25 8.7
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 34.3 bits (75), Expect = 0.019
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +1
Query: 76 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT- 252
++S I + L S ++ GDLNC ++ TP L+ D + ++ P T T
Sbjct: 4 LISMMIVSFLAPDVSAVIGGDLNCTQYNGSAFVWTPAAVACSNLISDASCAVLYPTTDTL 63
Query: 253 HYPL--NIAHRP 282
YP N A RP
Sbjct: 64 GYPAPGNAAGRP 75
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +1
Query: 43 IASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSH-TTTPNGRRLDA 204
I++VY+PP + L +D + S I++GD+N H W+S + GR L
Sbjct: 3 ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62
Query: 205 LVD 213
L+D
Sbjct: 63 LID 65
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 246
I L S I ALL +S ++ GDLNC ++ TP ++ D + ++ AP+
Sbjct: 2 IALVSFILALLAPQASAVIGGDLNCTSYNGSAFVWTPAATACSNVISDSSCAVLYPAPVP 61
Query: 247 PTHYP 261
YP
Sbjct: 62 ADGYP 66
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 76 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT- 252
++S I + L S ++ GDLNC ++ TP + D + ++ P T T
Sbjct: 4 LISMMIVSFLAPDVSAVIGGDLNCTTFNGSAFVWTPAAVACSNFISDASCAVLYPTTDTL 63
Query: 253 --HYPLNIAHRP 282
P N A RP
Sbjct: 64 GFPAPGNAAGRP 75
>AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical
protein T05B4.8 protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 40 VIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDL 219
V+ S+ L ++S +L +S ++ GDLNC + TP+ + D
Sbjct: 54 VVLSLLLNKMIALVSLFFVSLFAPEASAVIGGDLNCTTYNGTAFVWTPSAVACSNTISDA 113
Query: 220 AFDIVAPLTPT-HYPL--NIAHRP 282
+ I+ P T T +P N A RP
Sbjct: 114 SCAILYPTTDTLGFPAAGNAAGRP 137
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 31 APIVIASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNS 168
+P+ I +Y PP + L + +E+ + + S ILAGDLN I W+S
Sbjct: 433 SPLSIFLIYRPPCCSVSENAALIAHLESYIPL-SRTILAGDLNFPQINWSS 482
>AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical
protein T05B4.12 protein.
Length = 244
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +1
Query: 115 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYP 261
SS ++ GDLNC S TP + D + ++ T YP
Sbjct: 13 SSAVIGGDLNCTSYNGTSFVYTPAAVACSNAISDASCQVLYAAPDTLYP 61
>Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.13 protein.
Length = 249
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 246
I L S I ALL +S ++ GDLNC + ++ D + ++ AP+
Sbjct: 2 IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61
Query: 247 PTHYP 261
YP
Sbjct: 62 ADGYP 66
>Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.10 protein.
Length = 249
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 246
I L S I ALL +S ++ GDLNC + ++ D + ++ AP+
Sbjct: 2 IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61
Query: 247 PTHYP 261
YP
Sbjct: 62 ADGYP 66
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 120 RAPHAEQRLDITA*NDLIRWKINGRDND 37
R + E ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 120 RAPHAEQRLDITA*NDLIRWKINGRDND 37
R + E ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 185 FGVVVCEFHLMCLQFRSPARMTEL 114
F + VC F C+ F++P RMT +
Sbjct: 26 FEIPVCTFGAYCILFKTPERMTSV 49
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAP 240
I L S I A L +S ++ GDLNC + T ++ D + ++ P
Sbjct: 2 IALVSFILAFLAPQASAVIGGDLNCTTYNGTAFVWTTAATACSNVISDSSCAVLYP 57
>AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.4 protein.
Length = 248
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLT-- 246
I L S + A L ++ +++G+LNC + TP+ + D + + P +
Sbjct: 2 IALFSVLIAFLTPQANAVISGELNCTTYNGTAFVYTPSATACSNAISDSSCAALYPASDP 61
Query: 247 PTHYPL--NIAHRP 282
T YP N RP
Sbjct: 62 ATGYPAPGNDVERP 75
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 73 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLT-- 246
I L S + A L ++ +++G+LNC + +P+ + D + + P +
Sbjct: 2 IALFSVLIAFLAPQANAVISGELNCTTYNGTAFVYSPSATACSNAISDSSCAALYPASDP 61
Query: 247 PTHYPL--NIAHRP 282
T YP N RP
Sbjct: 62 ATGYPAPGNDVERP 75
>AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical
protein Y46H3D.8 protein.
Length = 247
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = +1
Query: 103 LGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYP 261
L G+ ++G+ NC S TP ++ D + ++ T YP
Sbjct: 13 LASGTEAAISGNYNCTTYNGTSFVYTPAAVACSNVISDASCQVLYAAPDTLYP 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,680
Number of Sequences: 27780
Number of extensions: 135916
Number of successful extensions: 303
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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