Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0198
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   6.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.1  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 264 KYRTSPGYTRYSVIKK 311
           K+  +PGYT   VIK+
Sbjct: 213 KFYGTPGYTAPEVIKQ 228


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 139 LNCKHIRWNS 168
           L   HIRWNS
Sbjct: 504 LAINHIRWNS 513


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 139 LNCKHIRWNS 168
           L   HIRWNS
Sbjct: 594 LAINHIRWNS 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,440
Number of Sequences: 438
Number of extensions: 1880
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)