Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0198
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    28   1.1  
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei...    27   2.6  
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr...    26   6.1  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    25   8.1  
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i...    25   8.1  
At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related...    25   8.1  

>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +1

Query: 73  IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDI-----VA 237
           IV ++ +E +LG  +  I   D   KH+         NGR+L  + D +  D        
Sbjct: 363 IVATTRVETMLGDTAIAIHPDDARYKHLHGKFAVHPFNGRKLPIICDGILVDPNFGTGCV 422

Query: 238 PLTPTHYP 261
            +TP H P
Sbjct: 423 KITPAHDP 430


>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein
          / TCV-interacting protein (TIP) contains Pfam PF02365:
          No apical meristem (NAM) domain; similar to NAC2
          (GI:6456751) {Arabidopsis thaliana}; identical to cDNA
          TIP mRNA,  GI:9408600
          Length = 451

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 69 IRWKINGRDNDRRVSRQ*D 13
          +R KING DND RV R+ D
Sbjct: 31 LRLKINGHDNDVRVIREID 49


>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 379

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 181 PNGRRLDALVDDLAFDIVAPLTPTHYP 261
           P+ +R   L DDL F+ +A ++  HYP
Sbjct: 7   PSIKRFLMLPDDLVFNCLARVSRLHYP 33


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  LTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILA 132
           L GH+  V ++ + PP   VLSS  +  + + S+ + A
Sbjct: 414 LLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNA 451


>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
            identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
            thaliana] GI:22212705; contains Pfam profile PF03031: NLI
            interacting factor
          Length = 1241

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 67   DKIVLSSDIEALLGMGSSVILAGD 138
            +++  S D+E ++GM SSV++  D
Sbjct: 1042 ERVPKSKDLEGVMGMESSVVIIDD 1065


>At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related
           contains weak similarity to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 532

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  VIASVYLPPDKIVLSSDIEALLG 108
           V+ S+  PPDK+V S D E   G
Sbjct: 365 VLHSLRSPPDKVVTSKDSETTAG 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,896,623
Number of Sequences: 28952
Number of extensions: 130953
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)