Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FPU9 Cluster: Similar to sp|P47054 Saccharomyces cere...    36   1.5  
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella...    33   6.1  
UniRef50_Q8I2M2 Cluster: Putative uncharacterized protein PFI141...    33   8.1  
UniRef50_Q7RHP8 Cluster: Putative uncharacterized protein PY0393...    33   8.1  

>UniRef50_Q6FPU9 Cluster: Similar to sp|P47054 Saccharomyces
            cerevisiae YJL039c NUP192; n=1; Candida glabrata|Rep:
            Similar to sp|P47054 Saccharomyces cerevisiae YJL039c
            NUP192 - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 1710

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 610  DIRNKNIFIYLFLD-KFNEDFVSIIVFLHHIYNVINS 503
            D+    I +Y+ +D KF E+ VS++VFL HIYN  N+
Sbjct: 1361 DMVTPKISVYVDIDVKFAEELVSLMVFLFHIYNQSNA 1397


>UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria
           tenella|Rep: RNA polymerase C2 - Eimeria tenella
          Length = 1050

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -1

Query: 607 IRNKNIFIYLFLDKFNEDFVSIIVFLHHIYNVINSYEIIFNAYMTLKKNTDVLRMFYIAM 428
           I+NK+ FI+ +   FN +   + V  H I  + N+ +I++  Y  LK N  + + FYI  
Sbjct: 342 IKNKDNFIFNYKYFFNINKYKLCVKYHKIKRLKNNNKILYFIY--LKNNYFIFKSFYILF 399

Query: 427 I 425
           I
Sbjct: 400 I 400


>UniRef50_Q8I2M2 Cluster: Putative uncharacterized protein PFI1410c;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFI1410c - Plasmodium falciparum
            (isolate 3D7)
          Length = 1501

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 538  VFLHHIYNVINSYEIIFNAYMTLKKNTDVLR 446
            V +HH+Y   ++Y  I ++Y+ LKKN D+++
Sbjct: 1449 VIIHHMYISKHNYFFIISSYINLKKNYDIVK 1479


>UniRef50_Q7RHP8 Cluster: Putative uncharacterized protein PY03936;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY03936 - Plasmodium yoelii yoelii
          Length = 1554

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 111 INKLSRAQDVVLCAEEYTSYIIFLLQKKKKKNRD 10
           IN + + + V+ C E    +I  L++KKKKKN D
Sbjct: 141 INLIKKFESVIKCIEVSQEHIFVLVKKKKKKNTD 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,872,444
Number of Sequences: 1657284
Number of extensions: 11244546
Number of successful extensions: 24673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24654
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)