Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    24   1.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.8  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   6.4  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   6.4  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   6.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.4  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 286 ILSHFIFASFKKVIKKTFVYKHRHQYII-IWRCLIRIYKN*KI----FINFGSLLYKT-S 447
           + S F   SF  + + TFV K    Y+I +++  ++  +  KI    FI+  S L KT +
Sbjct: 216 VFSFFFMPSFVDIFRLTFVDKTASDYLINVFKTTLQEREKKKIIRNDFIDLLSNLRKTET 275

Query: 448 VKRPYSF 468
           +   Y F
Sbjct: 276 ITDSYKF 282


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 687 FIIFPTRFY 713
           FIIFPT FY
Sbjct: 305 FIIFPTHFY 313


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 671 VHKIIFYYISNEILFIWVFKLTKSQIYSTA 760
           V  ++  +I+ +  FIWVF      + STA
Sbjct: 211 VMALVLQFITLQHTFIWVFNDVFVMLLSTA 240


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 671 VHKIIFYYISNEILFIWVFKLTKSQIYSTA 760
           V  ++  +I+ +  FIWVF      + STA
Sbjct: 211 VMALVLQFITLQHTFIWVFNDVFVMLLSTA 240


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 671 VHKIIFYYISNEILFIWVFKLTKSQIYSTA 760
           V  ++  +I+ +  FIWVF      + STA
Sbjct: 211 VMALVLQFITLQHTFIWVFNDVFVMLLSTA 240


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 123 LNEAINKLSRAQDVVLCAE 67
           L  A+   SRA DVVL  E
Sbjct: 431 LKTAVGSFSRAMDVVLGTE 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,996
Number of Sequences: 336
Number of extensions: 3356
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)