Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    30   0.33 
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.3  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   9.3  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    25   9.3  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 210 VNKKNVA*QIKYGGFTXKLKL-TQLFDRDFLNEAINKLSRAQDVVLCAEEYTSYIIFLLQ 34
           VN +  +  +K+     K  L T   + D LN  ++  ++  D  LC +    +  + ++
Sbjct: 104 VNIRETSKHLKHSTKAPKCSLPTSALEIDHLNNFLHSSAKILDRALCDQSNQLFTDYTVK 163

Query: 33  KKKKKNR 13
           KK KKN+
Sbjct: 164 KKSKKNK 170


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 138 FDRDFLNEAINKLSRAQDVVLCAEEYTSYIIFLLQKKKKK 19
           FD   LN   +KLS   D     EE+   +  +LQ+ +KK
Sbjct: 155 FDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKK 194


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 619 LKKDIRNKNIFIYLFLDKFNEDFVSIIVFLH 527
           +K  I    IF+   LD+ N DF  I  FLH
Sbjct: 225 VKPVIHGITIFLQSVLDELNRDFCYIDGFLH 255


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 671 VHKIIFYYISNEILFIWVFKLTKSQIYST 757
           +HK+I YY+S  IL+   +     + +ST
Sbjct: 4   IHKVILYYVSLTILYRVTYLFDLEEPWST 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,867
Number of Sequences: 5004
Number of extensions: 54422
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)