Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   7.4  
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)                 28   9.8  
SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 277 KEKILSHFIFASFKKVIKKTFVYKHRHQYIIIWRCLIRIYKN*KIFINFGSLLYKTSVKR 456
           +E ++  F   + K  +++ F YK   +YI + + L+  Y    +  N G ++  + VKR
Sbjct: 425 RESVVERFNH-TLKGWMRRYFTYKETRRYINVLQDLVDNYNRTIVVSNVGDIVRISKVKR 483

Query: 457 PYS 465
            ++
Sbjct: 484 TFT 486


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 648 CIYLRTQRFIKSFFIIFPT-RFYLFGF 725
           C+YLR   F K FF++F T  F++F F
Sbjct: 2   CLYLRKYVFAKLFFLLFLTVSFHVFMF 28


>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
          Length = 803

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 565 FNEDFVSIIVFLHHIYNVINSY---EIIFNAYMTLK 467
           FN +FV +   LH +Y++++ +   E ++ AY T K
Sbjct: 584 FNHEFVMLEAILHDLYDLVDVFIFVESVYTAYGTRK 619


>SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 201 KNVA*QIKYGGFTXKLKLTQLFDRDFLNEAINKLSRAQDVVLC 73
           +N+A QI       K  L Q+F   F  +A NKL   Q VV C
Sbjct: 254 ENLAHQISTVSVVIKPHLLQVFTDLFTQQASNKLPEFQPVVQC 296


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 78  LCAEEYTSYIIFLLQKKKKKNRD 10
           LC  +  SY+ ++LQKKK +N D
Sbjct: 639 LCDADKISYVWYVLQKKKVENED 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,749
Number of Sequences: 59808
Number of extensions: 334338
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)