Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    29   5.0  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical ...    28   8.7  
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +3

Query: 336 LCLQTSPSIYYNMALPH*DLQKLKNIYQFWIIAI*NIRKTSVFFLRVIYALKMIS 500
           + +Q +P+ Y     P  D+ +L++ YQ++   + N+RK+  +   ++  LK  S
Sbjct: 600 MVIQVAPTHYELFLSP--DVNQLRDHYQWFFFQVSNMRKSVKYTFEIVNCLKSTS 652


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 592 IFIYLFLDKFNEDF-VSIIVFLHHIYNVINSYEIIFNA 482
           +++Y+F      D  + I  F++H YNVI  Y+++ ++
Sbjct: 49  LYVYVFKTNRERDKEIVIFPFVNHFYNVIKIYQLLISS 86


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 672 FIKSFFIIFPTRFYLFGFSN 731
           FI SFF  FP  F++F FS+
Sbjct: 20  FIPSFFFTFPLFFFIFHFSS 39


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 672 FIKSFFIIFPTRFYLFGFSN 731
           FI SFF  FP  F++F FS+
Sbjct: 20  FIPSFFFTFPLFFFIFHFSS 39


>AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical
           protein Y113G7B.14 protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 201 KNVA*QIKYGGFTXKLKLTQLFDRDFLNEAINK-LSRAQDVVLCAEEYTSYIIFLLQK 31
           KNVA   K G F    +  ++FD    N  I K ++  Q+V++  E+ T  ++FL ++
Sbjct: 400 KNVAKLAKNGQFPKIGQFPEIFDIKHPNARITKTINIIQEVLMKKEKVTVSVVFLSER 457


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 532 LHHIYNVINSYEIIFNAYMTLKKNTDVLRMFYIA 431
           L HI N +N Y   F  Y+   ++TD + + Y++
Sbjct: 544 LVHILNCVNPYLNYFKKYIFFNESTDYIYVVYVS 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,202
Number of Sequences: 27780
Number of extensions: 286862
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)