Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0197
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 535 FLHHIYNVINSYEIIFNAYMTLKKNTDVL 449
           FLH + N+I+ Y ++ N   T + + DVL
Sbjct: 280 FLHKMKNIIDYYLVLENTDHTKQLSHDVL 308


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 699 PTRFYLFG-FSN*QSLKYIRQQLN 767
           PT F + G FSN +S KY  Q LN
Sbjct: 31  PTLFMIGGVFSNNKSKKYFEQTLN 54



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 553 FVSIIVFLHHIYNVINSYEI 494
           F+S+I+    IYN+I S ++
Sbjct: 9   FISLIILNDEIYNIIASPQL 28


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 169 AAIFYLLGYILFVY*TQHFKSSPESNEN 252
           A++ Y +G   F+Y  +HF +S E+  N
Sbjct: 193 ASMQYRVGAFGFLYLNKHFTNSEEAPGN 220


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 169 AAIFYLLGYILFVY*TQHFKSSPESNEN 252
           A++ Y +G   F+Y  +HF +S E+  N
Sbjct: 193 ASMQYRVGAFGFLYLNKHFTNSEEAPGN 220


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 631 LSSYLKKDIRNKNIFIYLFLDKFNEDFVSIIVFLHHIYNVINSYEI 494
           +SS   K I N N + Y + +K+N +  +    L++   +IN  +I
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 92  ALDNLFIASLRKSRSNNCVSF 154
           A DN+ +  L K R+  C+ F
Sbjct: 328 AYDNIVLKLLTKPRARGCIIF 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,882
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)