Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0196
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   3.1  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   4.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.4  

>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 318 SRSERLPEENFEKYQKSSNQLLK 386
           S +  L +ENFEKYQ+ + ++LK
Sbjct: 191 SENANLFKENFEKYQEENAKILK 213


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 572 SPCSVLGHRNVCDVSL*NHSNALSDHRRSPDKTCTAL 462
           SP S   H  +CD     H+N +  HRR+ D    AL
Sbjct: 101 SPTSKQTHMKLCD----QHNNGIEIHRRNCDSHAEAL 133


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 203  VLRDVTPEISQHMLTELEKLPGVQLGDFLLQFELDEPRE 319
            VL D+ P+I Q    ++  L    L DF+ Q  ++E  E
Sbjct: 1598 VLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELE 1636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,050
Number of Sequences: 5004
Number of extensions: 42375
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)