Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0196
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 30 1.8
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 29 2.4
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 29 2.4
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043... 28 5.6
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 27 9.8
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 27 9.8
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 27 9.8
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 27 9.8
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 27 9.8
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 27 9.8
>05_03_0525 + 15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 73 SYAITDNKIINNILAKQIISLKLLRIFFNSCATH 174
S +TDN NN+ A +++ +K IF+ SCA H
Sbjct: 1076 SLVVTDNAS-NNMSASKMLQVKHPHIFWTSCAAH 1108
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N I A +++ K IF+N CA H
Sbjct: 462 VTDNASVNTIAAS-LLTAKRPSIFWNGCAAH 491
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 500 LIKRYYGFKVKHHK--HYDGLTPSKETNVFTENVLTVLPT 613
L+ +Y+ + K +D PSKE+N F ENVL + T
Sbjct: 229 LLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLKDVET 268
>01_06_1083 -
34403769-34403774,34403819-34403918,34404235-34404318,
34404427-34404506,34404614-34404707,34404796-34404887,
34405335-34405425,34405617-34405719,34405919-34406008,
34406154-34406235,34406434-34406481,34406601-34406897,
34406992-34407078,34408047-34408247,34408329-34408533,
34409362-34410152
Length = 816
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 521 FKVKHHKHYDGL-TPSKETNVFTENVLTVLPTRD 619
FK+ + K DG+ P E N +TE+ L +L T+D
Sbjct: 681 FKMINSKTVDGIHRPKPEANKYTEDELMLLKTKD 714
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 440 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 469
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 401 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 430
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 335 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 364
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 279 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 308
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 339 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 368
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 82 ITDNKIINNILAKQIISLKLLRIFFNSCATH 174
+TDN +N A +++ K IF+N CA H
Sbjct: 335 VTDNASVNTTAAS-LLTAKRPSIFWNGCAAH 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,881
Number of Sequences: 37544
Number of extensions: 260815
Number of successful extensions: 609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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