Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0196
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     34   0.087
SB_30478| Best HMM Match : DUF723 (HMM E-Value=4.8)                    31   0.81 
SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027)                     30   1.4  

>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 188 PETRIVLRDVTPEISQHMLTELEKLPGVQLGDFLLQ 295
           PE  I + D+TP+++ HML      PG ++ D +LQ
Sbjct: 115 PEFSIFVGDLTPDVNDHMLQVRSHAPGERVNDHMLQ 150


>SB_30478| Best HMM Match : DUF723 (HMM E-Value=4.8)
          Length = 705

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 494 YDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTVLPTRDQCG 628
           YD  KRYYG  V   + Y    P      F    + VLP R  CG
Sbjct: 511 YDSWKRYYGLTVTSTEEYPHFNPPHHRRGFIYKGIKVLP-RQTCG 554



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 494 YDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTVLPTRDQCG 628
           YD  KRYYG  V   + Y    P      F    + VLP R  CG
Sbjct: 616 YDSWKRYYGLTVTSTEEYPHFNPPHHRRGFIYKGIKVLP-RQTCG 659


>SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027)
          Length = 263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 635 PSARTDLWSAAPSARSP*TH*SPCSVLGHRNVCDVS 528
           PS++TD+ +A+PS+ +P +   P  V G RN  D S
Sbjct: 168 PSSKTDITTASPSSNTPDSQ-GPPGVYGRRNDADNS 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,975
Number of Sequences: 59808
Number of extensions: 326258
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)