Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0196
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding pro... 50 7e-06
J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein. 50 7e-06
BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding p... 50 7e-06
BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding p... 37 0.054
AY094971-1|AAM15733.1| 354|Homo sapiens cellular retinaldehyde-... 37 0.054
AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens ... 37 0.054
U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer... 35 0.29
D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer... 35 0.29
BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha) tran... 35 0.29
AF031324-1|AAC67490.1| 119|Homo sapiens alpha-tocopherol transf... 35 0.29
BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding p... 32 1.5
BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding p... 32 1.5
AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetic... 32 1.5
AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein. 30 8.2
AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein. 30 8.2
>L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding
protein protein.
Length = 317
Score = 50.0 bits (114), Expect = 7e-06
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Frame = +2
Query: 215 VTPEISQHMLTELEKL----------PGVQLGDFLLQFELDE--PRESVREIARRELRXX 358
+ PE Q + +LE+L P QL LQ DE RE RE A REL+
Sbjct: 10 MVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEM 69
Query: 359 XXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHH 538
L ++E V + + +RF+R KF AY+L++ Y F++++
Sbjct: 70 VQAQAASGEELAVAVAE----RVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 125
Query: 539 KHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVLDL 652
+ +D L+P VL +RD+ GR V++ ++
Sbjct: 126 ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
>J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein.
Length = 317
Score = 50.0 bits (114), Expect = 7e-06
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Frame = +2
Query: 215 VTPEISQHMLTELEKL----------PGVQLGDFLLQFELDE--PRESVREIARRELRXX 358
+ PE Q + +LE+L P QL LQ DE RE RE A REL+
Sbjct: 10 MVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEM 69
Query: 359 XXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHH 538
L ++E V + + +RF+R KF AY+L++ Y F++++
Sbjct: 70 VQAQAASGEELAVAVAE----RVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 125
Query: 539 KHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVLDL 652
+ +D L+P VL +RD+ GR V++ ++
Sbjct: 126 ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
>BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding
protein 1 protein.
Length = 317
Score = 50.0 bits (114), Expect = 7e-06
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Frame = +2
Query: 215 VTPEISQHMLTELEKL----------PGVQLGDFLLQFELDE--PRESVREIARRELRXX 358
+ PE Q + +LE+L P QL LQ DE RE RE A REL+
Sbjct: 10 MVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEM 69
Query: 359 XXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHH 538
L ++E V + + +RF+R KF AY+L++ Y F++++
Sbjct: 70 VQAQAASGEELAVAVAE----RVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 125
Query: 539 KHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVLDL 652
+ +D L+P VL +RD+ GR V++ ++
Sbjct: 126 ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
>BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding
protein 1-like 1 protein.
Length = 354
Score = 37.1 bits (82), Expect = 0.054
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 36 EKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLA 95
Query: 509 RYYGFK---VKHHKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ + K++ P + + VL RD GR++L+L
Sbjct: 96 QYFQYRQLNLDMFKNFKADDPGIK-RALIDGFPGVLENRDHYGRKILLL 143
>AY094971-1|AAM15733.1| 354|Homo sapiens cellular
retinaldehyde-binding protein-like protein protein.
Length = 354
Score = 37.1 bits (82), Expect = 0.054
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 36 EKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLA 95
Query: 509 RYYGFK---VKHHKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ + K++ P + + VL RD GR++L+L
Sbjct: 96 QYFQYRQLNLDMFKNFKADDPGIK-RALIDGFPGVLENRDHYGRKILLL 143
>AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ34322 fis, clone FEBRA2008861, weakly similar to
CELLULAR RETINALDEHYDE-BINDING PROTEIN. ).
Length = 167
Score = 37.1 bits (82), Expect = 0.054
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 36 EKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLA 95
Query: 509 RYYGFK---VKHHKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ + K++ P + + VL RD GR++L+L
Sbjct: 96 QYFQYRQLNLDMFKNFKADDPGIK-RALIDGFPGVLENRDHYGRKILLL 143
>U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 425 VPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTV 604
+PL +++L+RFLR F + A+ L+K YY ++ + + L P + V
Sbjct: 45 LPLT-DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV 103
Query: 605 LPTRDQCGRRVLV 643
L +RD G +VL+
Sbjct: 104 LRSRDPTGSKVLI 116
>D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 425 VPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTV 604
+PL +++L+RFLR F + A+ L+K YY ++ + + L P + V
Sbjct: 45 LPLT-DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV 103
Query: 605 LPTRDQCGRRVLV 643
L +RD G +VL+
Sbjct: 104 LRSRDPTGSKVLI 116
>BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha)
transfer protein protein.
Length = 278
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 425 VPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTV 604
+PL +++L+RFLR F + A+ L+K YY ++ + + L P + V
Sbjct: 45 LPLT-DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV 103
Query: 605 LPTRDQCGRRVLV 643
L +RD G +VL+
Sbjct: 104 LRSRDPTGSKVLI 116
>AF031324-1|AAC67490.1| 119|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 425 VPLNNEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTPSKETNVFTENVLTV 604
+PL +++L+RFLR F + A+ L+K YY ++ + + L P + V
Sbjct: 45 LPLT-DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV 103
Query: 605 LPTRDQCGRRVLV 643
L +RD G +VL+
Sbjct: 104 LRSRDPTGSKVLI 116
>BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 14 EKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLA 73
Query: 509 RYYGFKVKH---HKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ ++ K + P + + L D GR++LVL
Sbjct: 74 QYFEYRQQNLDMFKSFKATDPGIK-QALKDGFPGGLANLDHYGRKILVL 121
>BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 14 EKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLA 73
Query: 509 RYYGFKVKH---HKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ ++ K + P + + L D GR++LVL
Sbjct: 74 QYFEYRQQNLDMFKSFKATDPGIK-QALKDGFPGGLANLDHYGRKILVL 121
>AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetical
proteins from ).).
Length = 327
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 EIARRELRXXXXXXXXXXXXLKRLLSEDTDMHVPLNNEAWLIRFLRPCKFYPESAYDLIK 508
E AR EL ++ ++ D+ ++A+++RFLR KF+ A+ L+
Sbjct: 14 EKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLA 73
Query: 509 RYYGFKVKH---HKHYDGLTPSKETNVFTENVLTVLPTRDQCGRRVLVL 646
+Y+ ++ ++ K + P + + L D GR++LVL
Sbjct: 74 QYFEYRQQNLDMFKSFKATDPGIK-QALKDGFPGGLANLDHYGRKILVL 121
>AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein.
Length = 2248
Score = 29.9 bits (64), Expect = 8.2
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +2
Query: 185 EPETRIVLRDVTPEISQHMLTELEKLPGVQLGDFLLQFELDEPRESVREIARRELRXXXX 364
+PE + L+ V+ + H ++K+PG + FE ++ V + R+ +R
Sbjct: 1720 KPEEHMYLK-VSNFLLSHEYLNMDKVPGFYQFFYSSDFEQKTEQKWVFGLLRQGIRDKQC 1778
Query: 365 XXXXXXXXLKRLLSEDTDMHVPLNNEA---WLIRFLRPCKFYPESAYDLIKRY 514
+ ++ + H PL +EA W++ L+ SAY++I+ Y
Sbjct: 1779 YELCARRGIFHIIL--SFFHSPLCDEAAQNWILEILQNAAQVARSAYEIIRDY 1829
>AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein.
Length = 2046
Score = 29.9 bits (64), Expect = 8.2
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +2
Query: 185 EPETRIVLRDVTPEISQHMLTELEKLPGVQLGDFLLQFELDEPRESVREIARRELRXXXX 364
+PE + L+ V+ + H ++K+PG + FE ++ V + R+ +R
Sbjct: 1518 KPEEHMYLK-VSNFLLSHEYLNMDKVPGFYQFFYSSDFEQKTEQKWVFGLLRQGIRDKQC 1576
Query: 365 XXXXXXXXLKRLLSEDTDMHVPLNNEA---WLIRFLRPCKFYPESAYDLIKRY 514
+ ++ + H PL +EA W++ L+ SAY++I+ Y
Sbjct: 1577 YELCARRGIFHIIL--SFFHSPLCDEAAQNWILEILQNAAQVARSAYEIIRDY 1627
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,919,312
Number of Sequences: 237096
Number of extensions: 1515728
Number of successful extensions: 2584
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2584
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -