Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0196
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    31   0.71 
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 388 LFNSWFDDFWYFSKFSSGNLSDRLTWF 308
           LF  WF  FW FS+FS      +L  F
Sbjct: 838 LFEIWFSQFWKFSEFSVNRFDQKLQEF 864


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 342 ENFEKYQKSSNQLLKS*KDFLVKIQICMFL 431
           E FE+Y KS+NQ+L +   F++K +   F+
Sbjct: 153 ETFERYTKSTNQILDNMHQFMMKNEKMRFM 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,814
Number of Sequences: 27780
Number of extensions: 238427
Number of successful extensions: 706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)