Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0196
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11900.1 68417.m01893 S-locus lectin protein kinase family pr...    29   2.7  
At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c...    29   2.7  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    28   6.2  
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    27   8.2  

>At4g11900.1 68417.m01893 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 849

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 154 FNSCATHNACRTGNENRPSRCYPG 225
           +NSC +   C    E  P RC PG
Sbjct: 318 YNSCGSFGICNENREPPPCRCVPG 341


>At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein
           contains Pfam profiles PF02446:
           4-alpha-glucanotransferase, PF00686: Starch binding
           domain; contains a non-consensus AT-AC intron between at
           intron 5
          Length = 955

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 324 SERLPEENFEKYQKSSNQLLKS*KDF 401
           SERLPE+  E+ QK+ NQL K+  D+
Sbjct: 348 SERLPEDIKEEIQKAKNQLDKNDVDY 373


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 392 KRLLSEDTDMHVPLNNEAWLIRFLRPCKFYP---ESAYDLIKRYYGFKVKHHKHYDGLTP 562
           + LL E   +H P +    LIR ++P  F P     +Y+       F+ +   HY  L  
Sbjct: 528 RNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFR-EVLFHYSSLFD 586

Query: 563 SKETNVFTENVLTVLPTRDQCGRRVL 640
             +TN+  E+ + V+  ++  GR ++
Sbjct: 587 MCDTNLTREDPMRVMFEKEFYGREIM 612


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 PETRIVLRDVTPEISQHMLTELEK 259
           PE  + + D+ P+++ HMLTE  K
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFK 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,077
Number of Sequences: 28952
Number of extensions: 213154
Number of successful extensions: 522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)