Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0194
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   2.8  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   4.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    24   8.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   8.5  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 122 NFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKLEGDVVKVKNVHIIDGVKKYIEWTAKL 301
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +  +    
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAHEMFLNNR 431

Query: 302 TDDANKAAKLTVT 340
             + N + +  +T
Sbjct: 432 VSEINSSLEKQLT 444


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 258 SSTASRSI*NGRPSSPTTPI--KPQS*QSLLSLEKY 359
           +S  SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 249 TCISSTASRSI*NGRPSSPTTPIKPQS*QSLLSLE 353
           +C+   + + + +G PSS ++P+K  S  + L+ E
Sbjct: 249 SCLEVDSVKRLLSGSPSSSSSPLKKDSSSNSLTYE 283


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 131 LTAYQGIWYEISKFPNESEKNGKCSSXEYKLEGDVVKVKNVHII 262
           L  + G+W ++ +F  E     KCS    KL G  V  K + ++
Sbjct: 869 LLMHHGLWQKLEEFLGELRTQTKCS---IKLSGREVVAKMLVVL 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,768
Number of Sequences: 5004
Number of extensions: 25610
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)