Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0194
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    53   1e-07
02_04_0592 - 24171698-24172285                                         42   2e-04
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310...    31   0.51 
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    30   0.67 
07_01_1023 + 8840754-8842988,8843189-8843362                           29   1.2  
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    29   1.5  
10_01_0334 - 3680612-3681266,3682253-3682374                           27   4.7  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +2

Query: 107 LKPXNNFNLTAYQGIWYEISKFPNESE-KNGKCSSXEYKLEGD-VVKVKNVHIIDGVKKY 280
           +K   N +L  Y G WYEI+ FP+  + ++G  +   Y L GD  VKV N    DG + +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 281 IEWTAKLTDDANKAAKLTVTF 343
           IE TA   D  +  AKL V F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +2

Query: 104 ELKPXNNFNLTAYQGIWYEISKFPNESE-KNGKCSSXEYKL--EGDVVKVKN-VHIIDGV 271
           E+      ++  Y G WYEI+  PN  + ++G+ +   Y L  +G  V V N      G 
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 272 KKYIEWTAKLTDDANKAAKLTVTF 343
           + YI+ TA   D A+  AKL V F
Sbjct: 73  RDYIKGTAYKADPASDEAKLKVKF 96


>04_03_0813 -
           19929562-19929798,19930209-19930580,19930686-19931039,
           19931120-19931188,19931294-19931479,19932762-19932989,
           19933655-19934020,19934154-19934354,19934923-19935093,
           19935178-19935285,19935423-19935635,19936093-19936299,
           19936485-19936586,19936714-19936902,19937766-19937933
          Length = 1056

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 215 YKLEGDVVKVKNVHII-DGVKKYIEWTAKLTD 307
           Y  +GDVVK   + ++ +G+ KY+EW+A + D
Sbjct: 312 YYSDGDVVKDLALDLVQNGLAKYVEWSANVLD 343


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 NFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKLEGD 232
           NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 204 NFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 89  EGTCPELK---PXNNFNLTAYQGIW-YEISKFPNESEKNGKCSSXEYKLEGDVVKVKNVH 256
           EG C +     P  N  +TA  G+W +++S   N S K G C         D++  KN+ 
Sbjct: 288 EGLCEDANDTIPSTNLMITA--GVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLT 337

Query: 257 IIDGV 271
           I+DGV
Sbjct: 338 IVDGV 342


>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 215 YKLEGDVVKVKNVHIID-GVKKYIEWTAKLTD 307
           Y  +GD +K   + +++ G+ KY+EW+A + D
Sbjct: 310 YYSDGDTLKDLALELVENGLAKYVEWSANMMD 341


>10_01_0334 - 3680612-3681266,3682253-3682374
          Length = 258

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 238 EGQERAYHRRRQEVYRMDGQAHRRRQ*SRKAN 333
           EGQE+A  RRR    R   QA R R+   KA+
Sbjct: 39  EGQEKATQRRRAARMRQRQQAARGREDGEKAS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,012
Number of Sequences: 37544
Number of extensions: 169746
Number of successful extensions: 447
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)