Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0194
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 31 0.30
SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 30 0.69
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 29 1.2
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 2.8
SB_56949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 27 6.4
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 6.4
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 27 8.5
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 31.5 bits (68), Expect = 0.30
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 92 GTCPELKPXNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSXEYKLEGD 232
G C + N+T+Y G WY++ S F E E+N C + +Y L D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282
>SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 31.1 bits (67), Expect = 0.39
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 155 YEISKFPNESEKNGKCSSXEYKLEGDVVKVKNVHIIDGVKKYIEWTAKLTDDANKAAKLT 334
Y ++ P+ + NGK S ++ ++K K D K +EW KLT+ N T
Sbjct: 530 YHVTVSPHHHKSNGKVESAVKIMKKVIIKAKKDGS-DLWKSLLEWMEKLTNSRNIQLTST 588
Query: 335 VTF 343
T+
Sbjct: 589 TTY 591
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 233 VVKVKNVHIIDGVKKYIEWTAKLTDD 310
V K K++H++ GVK YI W A D
Sbjct: 1131 VSKAKHLHLVSGVKPYIYWLANYVWD 1156
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 168 NFPTNLRRTANALXLNTNWKVTW*RSRTCISSTASRSI*NGR 293
NF T +AL + W VTW R C +T S + GR
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74
>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 524
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 161 ISKFPNESEK-NGKCSSXEYKLEGDVVK--VKNVHIIDGVKKYIEWTAKLTDDANKAAKL 331
I P E K N +Y +GD +K V + I G K ++ WT K + + +L
Sbjct: 413 IGNDPREGRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELRSSGVEL 472
Query: 332 TVTF 343
VT+
Sbjct: 473 GVTY 476
>SB_56949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 176 NESEKNGKCS-SXEYKLEGDVVKVKNVHIIDGVKKYIEWTAKLTDDANKAAKLTVTFKFG 352
+ + GK S S Y++ + +N H G K I+W T NK A + F
Sbjct: 9 DRKRREGKISKSILYRINTTIATKRNFHQWKGTKAVIDW---FTSTKNKIASNFICFDIV 65
Query: 353 EISRDGSVQVLATDYNNYAIAYNC 424
E S ++L ++A Y+C
Sbjct: 66 EFYPSISHKLL-NKALDFAADYDC 88
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 218 KLEGDVVKVKNVHIIDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDY 397
KLE +KVK G+KK + ++ +A A KLT +K +DG+ + LAT +
Sbjct: 205 KLEMFSIKVKG-----GLKKGESYVLQIDFNAVLAEKLTGFYKSSYKDKDGNTRYLATTH 259
>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 212 EYKLEGDVVKVKNVHIIDGVKKYIEWTAKLTDDANKAAKLTVT 340
E G ++ ++ +H I + Y+EWT A+ A +T T
Sbjct: 488 ERATRGRLINIETIHKIIATQTYLEWTMVFLTLASCLAMMTET 530
>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 236 VKVKNVHIIDGVKKYIEWTAKLTDDA 313
+K KN++I D KKY E +L+D A
Sbjct: 305 LKTKNLNIQDSAKKYAEMQHRLSDFA 330
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 158 EISKFPNESEKNGKCSSXEYKLEGDVVKVKNVHIIDGVK 274
E+ ++ ESE+NGK SS + + V +K + + DG K
Sbjct: 38 EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 244 QERAYHRRRQEVYRMDGQAHRRRQ*SRKANSH 339
Q+ YH R Q+ ++ Q H+R+ S + ++H
Sbjct: 896 QQHGYHHRHQQKHQQKQQQHQRKT-SNRVSTH 926
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 VKNVHIIDGVKKYIEWTAKLT-DDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAY 418
V N++ G ++W + + D N +L + + G++ RDG+ + D N
Sbjct: 520 VGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRRNTIPDNPNACENK 579
Query: 419 NC 424
NC
Sbjct: 580 NC 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,531
Number of Sequences: 59808
Number of extensions: 197000
Number of successful extensions: 527
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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