Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0194
         (424 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.                   73   4e-13
J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.                   73   4e-13
CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.                 73   4e-13
CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.                 73   4e-13
BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.     73   4e-13
BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.     73   4e-13
BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.     73   4e-13
S80440-1|AAB35919.1|   98|Homo sapiens apolipoprotein D protein.       32   0.92 

>M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +2

Query: 77  EVIHEGTCPELKPXNNFNLTAYQGIWYEISKFPNESEKNGKCSSXEYKL-EGDVVKVKNV 253
           +  H G CP      NF++  Y G WYEI K P   E NG+C    Y L E   +KV N 
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79

Query: 254 HI-IDGVKKYIEWTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
            +  DG    IE  A    +  + AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 80  ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134


>S80440-1|AAB35919.1|   98|Homo sapiens apolipoprotein D protein.
          Length = 98

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 323 AKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 424
           AKL V  KF          +LATDY NYA+ Y+C
Sbjct: 12  AKLEV--KFSWFMPSAPYWILATDYENYALVYSC 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,521,581
Number of Sequences: 237096
Number of extensions: 903128
Number of successful extensions: 1657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)