Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0193
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   2.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   3.7  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   4.9  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   4.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   8.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.6  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 469 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 344
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 452 SIDGQSPHVVKSRVKWQTGAHPQ--KHVCAEVITRCPEVI 339
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 576 IALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYGS 680
           +++  PTF W          ++C  TRC YY+ GS
Sbjct: 147 VSVDQPTFQW---------GWLCVNTRCLYYDTGS 172


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 497 WYV*RVHAIISVLGRSIDGQS 435
           WYV R HA ISV  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 435 RLPIDAPAQHADDSMDPLDVPQGSTAPQRT 524
           RLP D P    DD++  L     S APQ T
Sbjct: 253 RLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 483 PLDVPQGSTAPQRTARHGRYSRTEHVMTNG 572
           P D PQGS+ P  T     +S   H  T+G
Sbjct: 18  PYDPPQGSSRPFFTVLKRAFSSVLHPFTSG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,433
Number of Sequences: 5004
Number of extensions: 64591
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)