Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0193
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   2.2  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    29   5.2  
08_01_0541 + 4702930-4703328,4703411-4703506,4703601-4703649,470...    29   5.2  
06_03_0523 - 21734045-21734301,21734452-21734578                       28   6.8  
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258           28   9.0  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 186 FISRMNPYSPELNYFLSYQYCR 251
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 450 APAQHADDSMDPLDVPQGSTAPQRTARH 533
           AP++HA  S  P   P  ++AP  + RH
Sbjct: 79  APSRHATPSSSPPSTPSSASAPPPSGRH 106


>08_01_0541 +
           4702930-4703328,4703411-4703506,4703601-4703649,
           4703771-4703865
          Length = 212

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 405 PFNATFNYMRRLPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRTEHVMTNGCIAL 584
           P +A+ + +  L I A A H D     LD   G +A    A H R S+   + T  C+ L
Sbjct: 84  PASASVSTVADLRILA-ASHLDSLKRRLDALHGDSARDLEASHSRISKRFKMQTQSCLQL 142


>06_03_0523 - 21734045-21734301,21734452-21734578
          Length = 127

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 438 LPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRT 551
           LP  AP Q A   M+PL   + + AP R  RH R+  T
Sbjct: 75  LPTGAPPQPAQ--MEPLGARRRTRAPPRRLRHRRHPLT 110


>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
          Length = 522

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 506 HCSTTHRPTWSVFQDGTRHD*WLHRAQSSDL 598
           H +T+H  TW++F  GT H  W HR +   L
Sbjct: 327 HDTTSHLLTWAMFLLGT-HPEWQHRLREEVL 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,610
Number of Sequences: 37544
Number of extensions: 471992
Number of successful extensions: 1174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)