Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0193
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 30 2.3
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 30 2.3
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39) 29 4.0
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 29 5.3
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 28 7.0
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 7.0
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 7.0
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 7.0
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 7.0
SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12) 28 7.0
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 7.0
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 28 7.0
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 28 7.0
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 28 7.0
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 7.0
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = +3
Query: 276 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 455
+ T + + Y TN Y+ D +++ ++ T L L + RRL
Sbjct: 70 YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129
Query: 456 AQHADDSMDP--LDVPQGSTAP-QRTARHGRYSRTEHVMT 566
QH + P P +TAP TA + YS + T
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDYSTNDDYRT 169
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 328 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
Length = 894
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 462 HADDS-MDPLDVPQGSTAPQRTARHGRYSRTEHVMTNG 572
H+D S ++ + G+TA RHG + EH++ NG
Sbjct: 446 HSDKSFVNSREHSSGNTALHMACRHGHFDIVEHLLENG 483
>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 565 VMTCSVLEYRPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 434
V C + CR V+C V+ C S+ L SS WA + GSL
Sbjct: 361 VCACRYVRSVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 271 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 314
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 854 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 897
>SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 364
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 274 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 317
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 651 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 694
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 80 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 123
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 967 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 1010
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 174
>SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 270
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 98 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 141
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 366 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 409
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 224 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 267
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 774 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 817
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 104 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +3
Query: 552 EHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 671
+H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 884 DHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 104 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 390 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 433
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 543 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 677
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 245 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 288
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 219 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 323
L+YF+++ YCR + L +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 183 YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 305
+FI+ NPY + + LG + S ETKEK I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513
>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -1
Query: 553 SVLEYRPCRAVRCGAVLPCGTSRGSMLSS---ACWAGASMGSLRM*LKVALNGR--PVLI 389
++ E+RPC RC + C + S SS +C G + + R+ + +L+G P L+
Sbjct: 993 NLYEHRPCARQRCSSTKKCEVTPWSAWSSCRGSCGVGRKVRTRRIIRQSSLSGMTCPSLV 1052
Query: 388 HK 383
K
Sbjct: 1053 KK 1054
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,327,585
Number of Sequences: 59808
Number of extensions: 553518
Number of successful extensions: 1567
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -