Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0190
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              190   7e-49
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 30   1.6  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   8.5  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  190 bits (463), Expect = 7e-49
 Identities = 90/127 (70%), Positives = 107/127 (84%), Gaps = 2/127 (1%)
 Frame = +2

Query: 5   KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
           KSCK+RGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR++NGGVGR AQ
Sbjct: 13  KSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGGVGRKAQ 72

Query: 185 AKQFGT--TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTY 358
           AK      +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTY
Sbjct: 73  AKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTY 132

Query: 359 RAHGRIN 379
           RAHGRIN
Sbjct: 133 RAHGRIN 139


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 185 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 364
           AKQ    +G WP     FL+  + N     D  +      +   IQ N+  C++++ Y+A
Sbjct: 202 AKQTCVVEGAWPLVENHFLIVQVTNVPL-VDGSSATATNKITVIIQENKDSCVQQKIYKA 260


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 386 CRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCCQHLIQRSSITARGIRRIS 222
           C G CD +H  Y+C   +    +C R    Q+P    +H   +SS  A G +R S
Sbjct: 245 CSG-CDFKHACYLCSAGSHPATKCFR-PQRQQPGGQSEHARPQSSNPASGFQRKS 297


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 130 LFNHVFEVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFAGF 5
           L +H+ +V+++       D   GL+C L ++ E+  T+FA +
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFAKY 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,842
Number of Sequences: 59808
Number of extensions: 379209
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)