Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0189
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep: Trans...   100   4e-20
UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG041...    48   3e-04
UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1; ...    41   0.036
UniRef50_A4N179 Cluster: Gp20; n=5; Haemophilus influenzae|Rep: ...    33   7.2  

>UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep:
           Transposase - Bombyx mori (Silk moth)
          Length = 346

 Score =  100 bits (239), Expect = 4e-20
 Identities = 47/49 (95%), Positives = 47/49 (95%)
 Frame = -1

Query: 366 PHPNLESLKTSLSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 220
           PHPNLESLKTSL  IKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE
Sbjct: 300 PHPNLESLKTSL--IKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 346


>UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG04119;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04119 - Caenorhabditis
           briggsae
          Length = 312

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = -1

Query: 363 HPNLESLKTSLSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 220
           HPN++SLK +L  +KA  D+D D +R  +   P RLKACI+  G +FE
Sbjct: 264 HPNVDSLKAAL--LKAWDDLDDDYLRRTVASVPARLKACIKAEGSNFE 309


>UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 459

 Score = 40.7 bits (91), Expect = 0.036
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = -1

Query: 366 PHPNLESLKTSLSLIKAAADIDMDLVRAAIDDWPRRLKA 250
           PH N++SLK SL   KA  ++D++ +RA +D +PRRL+A
Sbjct: 363 PHRNIDSLKDSLK--KAWDELDINYLRATVDSFPRRLEA 399


>UniRef50_A4N179 Cluster: Gp20; n=5; Haemophilus influenzae|Rep:
           Gp20 - Haemophilus influenzae 22.1-21
          Length = 912

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 572 NIILVKWWSFTKIF--SVDFLEDPEKLRPAGFVSFSHICA 685
           N++LV W    K F  SV+++EDPE +   G++S + + A
Sbjct: 99  NVVLVTWNDPKKYFKQSVEYIEDPEAIVKMGYISQTEVVA 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,853,469
Number of Sequences: 1657284
Number of extensions: 10280146
Number of successful extensions: 18535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18533
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)