Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0189
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   4.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   5.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -3

Query: 238 SRRSF*INFSVIRIYVLL 185
           S++SF +NF++  +Y++L
Sbjct: 109 SKKSFRMNFAIFNLYMVL 126


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
 Frame = +2

Query: 617 VDFLEDPEKLRPAG-------FVSFSHICALSQILN 703
           + FL    +L+P G       F+SFS IC L Q L+
Sbjct: 199 IRFLNQYLRLKPEGRISNRRVFISFSKICYLHQHLS 234


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
 Frame = +2

Query: 617 VDFLEDPEKLRPAG-------FVSFSHICALSQILN 703
           + FL    +L+P G       F+SFS IC L Q L+
Sbjct: 217 IRFLNQYLRLKPEGRISNRRVFISFSKICYLHQHLS 252


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 711 Y*LFNICESAQMWENETKPAGRNFSGSSKKSTEKILVND 595
           Y  F+   S++  +N+  P G N + SS  +    L ND
Sbjct: 477 YNSFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLAND 515


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 612 FQWTFWRIPRSCVQRVLFHFPTFVHFH 692
           F WT  +     V RVL +F  F+  H
Sbjct: 211 FGWTILQTVFFTVPRVLMYFDIFITEH 237


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 711 Y*LFNICESAQMWENETKPAGRNFSGSSKKSTEKILVND 595
           Y  F+   S++  +N+  P G N + SS  +    L ND
Sbjct: 425 YNSFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLAND 463


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 213 KFIQNDLRDFEYRPSICAASRLSQHERGPC 302
           + ++  + D    PS+ A SRL + + G C
Sbjct: 139 RLVKEGICDRSTAPSVSAISRLLRGKGGEC 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,827
Number of Sequences: 336
Number of extensions: 2818
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)