Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0189
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864...    28   6.6  
03_05_0410 + 23964223-23964267,23964654-23965853                       28   6.6  

>09_02_0408 -
           8638298-8638594,8638717-8639103,8639415-8640413,
           8640501-8640655,8640768-8640855,8640941-8641044,
           8641199-8641421,8641536-8641620,8641706-8642097,
           8642962-8643150
          Length = 972

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 634 SREVASSGFCFIFPHLCTFTDIKQLI 711
           SRE+ SSG+C I P   T T+++QL+
Sbjct: 390 SRELLSSGYCDI-PEEATLTNVEQLL 414


>03_05_0410 + 23964223-23964267,23964654-23965853
          Length = 414

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 437 YDLKVLVTRP*NHLKKKKKRRAQSLIPIWSHSR 339
           +D K+L T P  H KKKKKR   +++ +  H+R
Sbjct: 74  FDHKILATPPPAHGKKKKKRLIVNIVDV--HAR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,011
Number of Sequences: 37544
Number of extensions: 273709
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)