Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0189
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_22463| Best HMM Match : VWA (HMM E-Value=0)                         28   9.0  

>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -1

Query: 354 LESLKTSLSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 220
           +E LKT+++  K  A    + ++  I ++ RR++ C+Q +GGH E
Sbjct: 115 IEKLKTAITA-KINAIPKEECIKV-IQNFARRVQVCLQRNGGHLE 157


>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1865

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 544  LNEMR*YGMKYNLSKMVVIY*DFFSGLFGGSREVASSGFCFIFP 675
            +N++R  G  YN++  + +  D    +FGG R+ A   F    P
Sbjct: 1172 INDLRPSGSGYNVADALRVAADHAFTIFGGVRQTAPKTFVLFLP 1215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,519
Number of Sequences: 59808
Number of extensions: 312054
Number of successful extensions: 934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)