Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0189
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    41   0.001
Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = -1

Query: 366 PHPNLESLKTSLSLIKAAADIDMDLVRAAIDDWPRRLKA 250
           PH N++SLK SL   KA  ++D++ +RA +D +PRRL+A
Sbjct: 363 PHRNIDSLKDSLK--KAWDELDINYLRATVDSFPRRLEA 399



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 309 DIDMDLVRAAIDDWPRRLKACIQNHGGHFE 220
           ++++  +RA +D +P+R++ CI+  G  FE
Sbjct: 419 ELEIPYLRATVDAFPKRVRVCIEADGDIFE 448


>Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical
           protein ZK218.1 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 366 PHPNLESLK-----TSLSLIKAAADIDMDLVRAAIDDWPRRLKACIQN 238
           P P L++L+     T+ +     + ID DLVRAA+   P+    C Q+
Sbjct: 67  PVPGLKTLRPGKCFTTAATAAVTSPIDADLVRAAVSTCPKTCGYCCQS 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,158
Number of Sequences: 27780
Number of extensions: 252940
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)