Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0186
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 82 9e-17
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 31 0.17
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 1.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 6.2
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 81.8 bits (193), Expect = 9e-17
Identities = 65/180 (36%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Frame = +2
Query: 200 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 364
++ G KNGG R V P + +YP +E + +A RP ++R +L GTVCI
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59
Query: 365 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTST-RISLGNFKLPK 541
LLAGR GKRVV++ L L+VTGP+ N P+RR+ RYVI TS +I + + K
Sbjct: 60 LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK 118
Query: 542 HFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDDAGIKAIGARPD 721
F YF + + FA K +R DQK VD + AI A P+
Sbjct: 119 -FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 173
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 408 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 274
P S+ + P LP+RR +T I L ++ CLL P +R FS
Sbjct: 21 PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 537 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 674
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +3
Query: 507 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 686
P F +TSN +TS I S R+ ++ +TS K T +S+A S
Sbjct: 888 PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947
Query: 687 MLGSKPSEP 713
+ +EP
Sbjct: 948 SSNTLSTEP 956
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V +S P + L+S+ PI +T+ S P
Sbjct: 3158 SSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSV--LNSSTPITSSTTLNTSTP 3215
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + + L+S+ PI + + S P
Sbjct: 554 SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSV--LNSSTPITSSTVLNSSTP 611
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + L+S+ PI + + S P
Sbjct: 1298 SSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPITSSTVVNSSTP 1355
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 686 SSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV--LNSSTPITSSTALNTSTP 743
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 1586 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPITSSTVLNSSTP 1643
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 1850 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPITSSTVLNSSTP 1907
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 2042 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPITSSTVLNSSTP 2099
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P L+S+ PI S + S P
Sbjct: 3014 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTV--LNSSTPITSSSVLNSSTP 3071
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + L+S+ PI + + S P
Sbjct: 530 SSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPITSSTVVNTSTP 587
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 914 SSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPITSSSV--LNSSTPITSSTVLNSSTP 971
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S+ NTS ITS + ++S +++ + TS P + L+S+ PI + + S P
Sbjct: 998 SSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV--LNSSTPITSSTVVNTSTP 1055
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + L+S+ PI + + S P
Sbjct: 2642 SSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPITSSTVVNTSTP 2699
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + L+S+ PI + + S P
Sbjct: 2870 SSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPITSSTVVNTSTP 2927
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P + L+S+ PI + + S P
Sbjct: 2966 SSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPITSSTVVNTSTP 3023
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 525 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTMLGSKP 704
+S NTS ITS + ++S +++ V TS P ++S+ PI +T+ S P
Sbjct: 3254 SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV--VNSSTPITSSTTLNTSTP 3311
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +3
Query: 237 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 323
Y SNV SPS P R ++ L+ VHS MY
Sbjct: 96 YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,218
Number of Sequences: 5004
Number of extensions: 58696
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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